Effective results for Enterobacter cloacae EcWSU1 (eggnog40)

Summary

Number of putative secreted proteins: 677
- Predicted by EffectiveT3: 173 (high confidence), 335 (low confidence)
- Predicted by EffectiveCCBD: 33 within, 22 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 28 proteins (0 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1045856.EcWSU1_02036			+		ER
1045856.EcWSU1_02720		+			(mitochondrial)
1045856.EcWSU1_03925			+		ER
1045856.EcWSU1_03927		(<)			(ER); (plastid)
1045856.EcWSU1_00713		(<)			(mitochondrial)
1045856.EcWSU1_02755		(>)			ER
1045856.EcWSU1_01092		+	+		(ER)
1045856.EcWSU1_01472	+				mitochondrial; (mitochondrial)
1045856.EcWSU1_00290		(>)			mitochondrial
1045856.EcWSU1_04039		(>)			ER
1045856.EcWSU1_01086		+			ER
1045856.EcWSU1_02019	+				(mitochondrial)
1045856.EcWSU1_00602			+		ER
1045856.EcWSU1_04031			+		ER
1045856.EcWSU1_03648		(>)			ER
1045856.EcWSU1_00969	+				(mitochondrial)
1045856.EcWSU1_01989		(>)			ER
1045856.EcWSU1_00104	+				(mitochondrial)
1045856.EcWSU1_01695				(PF00367)	mitochondrial; (mitochondrial)
1045856.EcWSU1_04343			+		ER
1045856.EcWSU1_03104			+		ER
1045856.EcWSU1_01949			+		mitochondrial
1045856.EcWSU1_02186			+		(mitochondrial)
1045856.EcWSU1_02766		+			(ER)
1045856.EcWSU1_01661		(>)			(ER); (mitochondrial)
1045856.EcWSU1_00137	+				(ER)
1045856.EcWSU1_01686		+			mitochondrial; (mitochondrial)
1045856.EcWSU1_02888	+				ER; (ER)
1045856.EcWSU1_04484				(PF13347)	(ER)
1045856.EcWSU1_03119			+		mitochondrial; (mitochondrial)
1045856.EcWSU1_03242	+				mitochondrial
1045856.EcWSU1_03439			+		ER
1045856.EcWSU1_01346			+		ER
1045856.EcWSU1_00303		(>)			ER
1045856.EcWSU1_04493			+		(mitochondrial)
1045856.EcWSU1_04252			+		ER
1045856.EcWSU1_02568			+		ER
1045856.EcWSU1_03786			+		ER
1045856.EcWSU1_03780	+				(mitochondrial); (plastid)
1045856.EcWSU1_01040				(PF00367)	(mitochondrial)
1045856.EcWSU1_04310	+				ER
1045856.EcWSU1_00375			+		ER
1045856.EcWSU1_04448			+		mitochondrial
1045856.EcWSU1_00812	+				(mitochondrial); mitochondrial
1045856.EcWSU1_00816		+			ER
1045856.EcWSU1_01973		+			ER
1045856.EcWSU1_01159		+			mitochondrial; (mitochondrial)
1045856.EcWSU1_00175		(<)			(ER)
1045856.EcWSU1_03087			+		(ER); ER
1045856.EcWSU1_03337				(PF00367)	(mitochondrial)
1045856.EcWSU1_03336				(PF07678)	ER
1045856.EcWSU1_04429			+		(mitochondrial)
1045856.EcWSU1_00166			+		(mitochondrial)
1045856.EcWSU1_00357		+			(mitochondrial)
1045856.EcWSU1_02079		(>)			ER
1045856.EcWSU1_01259		(>)			ER
1045856.EcWSU1_02864	+				(mitochondrial); (plastid)
1045856.EcWSU1_01586		(>)			mitochondrial
1045856.EcWSU1_04227		(>)			ER
1045856.EcWSU1_03531				(PF00367)	mitochondrial
1045856.EcWSU1_01108		(<)			(mitochondrial)
1045856.EcWSU1_01612			+		ER
1045856.EcWSU1_01290			+		ER
1045856.EcWSU1_04028			+		ER
1045856.EcWSU1_03615		+			ER
1045856.EcWSU1_02704			+		(ER)
1045856.EcWSU1_00888		(>)			(mitochondrial); (plastid)
1045856.EcWSU1_00955			+		ER
1045856.EcWSU1_01013			+		(mitochondrial)
1045856.EcWSU1_00734			+		ER
1045856.EcWSU1_02597		+			ER; (ER)
1045856.EcWSU1_02028		(>)			ER
1045856.EcWSU1_02731		+			ER
1045856.EcWSU1_01634	+				ER; (ER)
1045856.EcWSU1_00893		(>)			ER
1045856.EcWSU1_01862	+				mitochondrial
1045856.EcWSU1_00668		(<)			ER
1045856.EcWSU1_02384			+		mitochondrial
1045856.EcWSU1_00071			+		ER; (ER)
1045856.EcWSU1_04542	+				(ER); (plastid)
1045856.EcWSU1_03257		+			ER
1045856.EcWSU1_02257			+		(mitochondrial)
1045856.EcWSU1_01134	+				mitochondrial
1045856.EcWSU1_03924	+				(plastid)
1045856.EcWSU1_01243				(PF00367)	(ER)
1045856.EcWSU1_00287	(+)				(mitochondrial)
1045856.EcWSU1_03399	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_01893	+				(mitochondrial)
1045856.EcWSU1_00674	+				(mitochondrial)
1045856.EcWSU1_03428	+				(plastid)
1045856.EcWSU1_04021	(+)				(mitochondrial); (plastid)
1045856.EcWSU1_03056	+				(plastid)
1045856.EcWSU1_02346	+		+
1045856.EcWSU1_04099			+		(mitochondrial)
1045856.EcWSU1_00592	+				(mitochondrial)
1045856.EcWSU1_00021	+			(PF00367)
1045856.EcWSU1_03005	(+)				(ER)
1045856.EcWSU1_03827	(+)				(mitochondrial)
1045856.EcWSU1_02774	+		+
1045856.EcWSU1_02773	(+)				ER; plastid
1045856.EcWSU1_00853		(>)			(mitochondrial)
1045856.EcWSU1_00852		(>)			(plastid)
1045856.EcWSU1_04134	+				(mitochondrial)
1045856.EcWSU1_02762	(+)				(mitochondrial)
1045856.EcWSU1_01190	+				(mitochondrial)
1045856.EcWSU1_00483	(+)				(ER)
1045856.EcWSU1_02882	(+)				mitochondrial
1045856.EcWSU1_04332	(+)				(mitochondrial)
1045856.EcWSU1_03093	(+)				(mitochondrial)
1045856.EcWSU1_03596	(+)				mitochondrial
1045856.EcWSU1_02151	+				(plastid)
1045856.EcWSU1_01234	(+)				(ER); (plastid)
1045856.EcWSU1_01303	+				(mitochondrial)
1045856.EcWSU1_03321			+		(mitochondrial)
1045856.EcWSU1_03899	(+)				(mitochondrial)
1045856.EcWSU1_04064	+				(mitochondrial)
1045856.EcWSU1_04327	+				(ER)
1045856.EcWSU1_04496	+				(plastid)
1045856.EcWSU1_02095	(+)				(mitochondrial)
1045856.EcWSU1_01823	(+)				(mitochondrial)
1045856.EcWSU1_00974	(+)				(mitochondrial)
1045856.EcWSU1_04312	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_03314	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_01755	+				(plastid)
1045856.EcWSU1_01033		+			(ER)
1045856.EcWSU1_01034	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_01968		(<)			(plastid)
1045856.EcWSU1_00873		(<)			(ER)
1045856.EcWSU1_01972	(+)				(ER); (mitochondrial)
1045856.EcWSU1_03145	+				(plastid)
1045856.EcWSU1_02120	(+)				(mitochondrial)
1045856.EcWSU1_01022	+				(mitochondrial)
1045856.EcWSU1_01806	+				plastid
1045856.EcWSU1_01484	+				(plastid)
1045856.EcWSU1_00513				(PF13347)	(ER)
1045856.EcWSU1_02061	(+)				(mitochondrial)
1045856.EcWSU1_04022	+	(>)
1045856.EcWSU1_04436	(+)				(mitochondrial)
1045856.EcWSU1_02696	+				(plastid)
1045856.EcWSU1_02818	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_01593	(+)				mitochondrial
1045856.EcWSU1_04221			+		mitochondrial
1045856.EcWSU1_01499		+			(ER)
1045856.EcWSU1_04154	+	(>)
1045856.EcWSU1_00188	+	+
1045856.EcWSU1_00250	(+)				(mitochondrial)
1045856.EcWSU1_04527		(<)	+
1045856.EcWSU1_02870	+				(plastid)
1045856.EcWSU1_00738		(>)			(mitochondrial)
1045856.EcWSU1_01935				(PF00367)	(plastid)
1045856.EcWSU1_01938	+	(<)
1045856.EcWSU1_00061	(+)				ER
1045856.EcWSU1_00195	+				(plastid)
1045856.EcWSU1_02245	(+)				(mitochondrial); (plastid)
1045856.EcWSU1_01111	(+)				ER; (ER)
1045856.EcWSU1_01384	(+)				(mitochondrial)
1045856.EcWSU1_00095	(+)				mitochondrial; (mitochondrial)
1045856.EcWSU1_02381	(+)				(mitochondrial); (plastid)
1045856.EcWSU1_00382	(+)				(ER); (plastid)
1045856.EcWSU1_00070		+			(ER)
1045856.EcWSU1_03073	(+)				(ER)
1045856.EcWSU1_03956	+
1045856.EcWSU1_00167			+
1045856.EcWSU1_01131	+
1045856.EcWSU1_03928	+
1045856.EcWSU1_00868	+
1045856.EcWSU1_00526	+
1045856.EcWSU1_03419			+
1045856.EcWSU1_01404	+
1045856.EcWSU1_00284	(+)		+
1045856.EcWSU1_03063	+
1045856.EcWSU1_03248	+
1045856.EcWSU1_02629	+
1045856.EcWSU1_03483			+
1045856.EcWSU1_03392	+
1045856.EcWSU1_02282		+
1045856.EcWSU1_02284				(PF00367)
1045856.EcWSU1_02530	(+)				(mitochondrial)
1045856.EcWSU1_03200	+
1045856.EcWSU1_00343	+
1045856.EcWSU1_02756	(+)		+
1045856.EcWSU1_03936	+
1045856.EcWSU1_03935			+
1045856.EcWSU1_01273	+
1045856.EcWSU1_02832	+
1045856.EcWSU1_04159	+				not used
1045856.EcWSU1_02278	+
1045856.EcWSU1_00297		(<)
1045856.EcWSU1_00294	(+)		+
1045856.EcWSU1_00057	+
1045856.EcWSU1_00818	+
1045856.EcWSU1_01701			+
1045856.EcWSU1_04365			+
1045856.EcWSU1_02523	+
1045856.EcWSU1_02809	(+)				plastid
1045856.EcWSU1_00789	+
1045856.EcWSU1_00110		(<)
1045856.EcWSU1_00930		(>)
1045856.EcWSU1_00596		+
1045856.EcWSU1_01295	+
1045856.EcWSU1_01460	+
1045856.EcWSU1_00027		(>)
1045856.EcWSU1_01433	(+)				(ER)
1045856.EcWSU1_03649	(+)				(plastid)
1045856.EcWSU1_03976			+
1045856.EcWSU1_02172			+
1045856.EcWSU1_03450	+
1045856.EcWSU1_01074	+
1045856.EcWSU1_01071	+
1045856.EcWSU1_01670	+
1045856.EcWSU1_04161			+
1045856.EcWSU1_01981	+
1045856.EcWSU1_00103	(+)		+
1045856.EcWSU1_01696	(+)	(>)
1045856.EcWSU1_02325	+
1045856.EcWSU1_04346	(+)				(plastid)
1045856.EcWSU1_03101	(+)				(ER)
1045856.EcWSU1_03038	(+)				(plastid)
1045856.EcWSU1_03980	+
1045856.EcWSU1_03587			+
1045856.EcWSU1_03584				(PF00367)
1045856.EcWSU1_02610		(<)
1045856.EcWSU1_02456	(+)				(plastid)
1045856.EcWSU1_02182	(+)				plastid
1045856.EcWSU1_03756			+
1045856.EcWSU1_01060	(+)	+
1045856.EcWSU1_01669	+
1045856.EcWSU1_00626			+
1045856.EcWSU1_00823	+
1045856.EcWSU1_01191	+				not used
1045856.EcWSU1_04121	(+)		+
1045856.EcWSU1_00487		(>)
1045856.EcWSU1_02979	(+)				(plastid)
1045856.EcWSU1_01681			+
1045856.EcWSU1_01680			+
1045856.EcWSU1_00556	+
1045856.EcWSU1_00550			+
1045856.EcWSU1_02885	+
1045856.EcWSU1_04010	+
1045856.EcWSU1_01532			+
1045856.EcWSU1_04485				(PF13347)
1045856.EcWSU1_03023	+
1045856.EcWSU1_03116		+
1045856.EcWSU1_03371				(PF00367)
1045856.EcWSU1_02573	+
1045856.EcWSU1_04467	(+)				(mitochondrial)
1045856.EcWSU1_02150	+
1045856.EcWSU1_02797			+
1045856.EcWSU1_02790	+
1045856.EcWSU1_03973		(<)
1045856.EcWSU1_01056	+
1045856.EcWSU1_01839				(PF13347)
1045856.EcWSU1_01831	+
1045856.EcWSU1_01835	+
1045856.EcWSU1_00499	+
1045856.EcWSU1_01309	+
1045856.EcWSU1_03095		(>)
1045856.EcWSU1_00492		(<)
1045856.EcWSU1_04492	+
1045856.EcWSU1_04494	+
1045856.EcWSU1_03569			+
1045856.EcWSU1_03564	+
1045856.EcWSU1_03768		+
1045856.EcWSU1_03763	+
1045856.EcWSU1_00862	+
1045856.EcWSU1_04474	(+)				(mitochondrial)
1045856.EcWSU1_03943	+
1045856.EcWSU1_03948	+
1045856.EcWSU1_02786	+
1045856.EcWSU1_02782	(+)				(plastid)
1045856.EcWSU1_01822	+
1045856.EcWSU1_01957		+
1045856.EcWSU1_01314	+
1045856.EcWSU1_00151	(+)			(PF13347)
1045856.EcWSU1_02957	+
1045856.EcWSU1_04079	+
1045856.EcWSU1_04070	+
1045856.EcWSU1_04313	+
1045856.EcWSU1_00374	+
1045856.EcWSU1_00201	+
1045856.EcWSU1_01025	+
1045856.EcWSU1_03573	+
1045856.EcWSU1_02318	+
1045856.EcWSU1_02423	+
1045856.EcWSU1_01313	+
1045856.EcWSU1_03796			+
1045856.EcWSU1_03793		(>)
1045856.EcWSU1_02049			+
1045856.EcWSU1_03417	(+)	+
1045856.EcWSU1_03890		(>)
1045856.EcWSU1_02362		(<)
1045856.EcWSU1_01149	+
1045856.EcWSU1_01146	(+)				(ER)
1045856.EcWSU1_01963		(>)
1045856.EcWSU1_00814	+
1045856.EcWSU1_02948			+
1045856.EcWSU1_00147	+
1045856.EcWSU1_02395	+
1045856.EcWSU1_03460	(+)		+
1045856.EcWSU1_00360	+
1045856.EcWSU1_03143	+
1045856.EcWSU1_03322				(PF16485)
1045856.EcWSU1_04458	+
1045856.EcWSU1_02123	+
1045856.EcWSU1_02438	+
1045856.EcWSU1_02057	(+)				(plastid)
1045856.EcWSU1_02054	(+)				(plastid)
1045856.EcWSU1_03945				(PF00367)
1045856.EcWSU1_01158	+
1045856.EcWSU1_01796	+
1045856.EcWSU1_01805	+
1045856.EcWSU1_01371	+
1045856.EcWSU1_01377	+
1045856.EcWSU1_01570	+
1045856.EcWSU1_04053			+
1045856.EcWSU1_00190	(+)				(ER)
1045856.EcWSU1_04200	+
1045856.EcWSU1_04420	+
1045856.EcWSU1_03088	(+)				plastid
1045856.EcWSU1_01518	+				not used
1045856.EcWSU1_04538		(>)
1045856.EcWSU1_04519		(<)
1045856.EcWSU1_02828	+
1045856.EcWSU1_02337	(+)				plastid
1045856.EcWSU1_02686	+
1045856.EcWSU1_02064	+
1045856.EcWSU1_01015	(+)				plastid
1045856.EcWSU1_02611	+
1045856.EcWSU1_00766		+
1045856.EcWSU1_00169			+
1045856.EcWSU1_01325		+
1045856.EcWSU1_00185	+
1045856.EcWSU1_03444		(>)
1045856.EcWSU1_00050	+
1045856.EcWSU1_04036	+
1045856.EcWSU1_04507	+
1045856.EcWSU1_04506	+
1045856.EcWSU1_02816	+
1045856.EcWSU1_02690	+
1045856.EcWSU1_02695	+
1045856.EcWSU1_03987			+
1045856.EcWSU1_01008			+
1045856.EcWSU1_01005	+
1045856.EcWSU1_01252	+
1045856.EcWSU1_03857	+
1045856.EcWSU1_01919		+
1045856.EcWSU1_02821			+
1045856.EcWSU1_01250	+
1045856.EcWSU1_02910	+
1045856.EcWSU1_01599	(+)	(<)
1045856.EcWSU1_01595	+
1045856.EcWSU1_01592	+
1045856.EcWSU1_01591				(PF00367)
1045856.EcWSU1_00533	(+)				plastid
1045856.EcWSU1_03655	(+)		+
1045856.EcWSU1_03194	+
1045856.EcWSU1_04406		(>)
1045856.EcWSU1_04404	+
1045856.EcWSU1_02718			+
1045856.EcWSU1_01667	+
1045856.EcWSU1_02901	+
1045856.EcWSU1_01296			+
1045856.EcWSU1_04075	+				not used
1045856.EcWSU1_03887		(<)			not used
1045856.EcWSU1_02875	+
1045856.EcWSU1_02873	(+)	+
1045856.EcWSU1_02878	+
1045856.EcWSU1_00414				(PF13347)
1045856.EcWSU1_04230		+
1045856.EcWSU1_03053				(PF00367)
1045856.EcWSU1_02297	(+)				plastid
1045856.EcWSU1_02474		(<)
1045856.EcWSU1_02273		+
1045856.EcWSU1_02441			+
1045856.EcWSU1_02011		(<)
1045856.EcWSU1_02017	+
1045856.EcWSU1_03879	(+)				(plastid)
1045856.EcWSU1_02702	+
1045856.EcWSU1_02495	(+)	(>)
1045856.EcWSU1_01606	(+)				(plastid)
1045856.EcWSU1_02800				(PF13347)
1045856.EcWSU1_00086	+
1045856.EcWSU1_00083				(PF13347)
1045856.EcWSU1_00460				(PF00367)
1045856.EcWSU1_00953	+
1045856.EcWSU1_00260		+
1045856.EcWSU1_00199	+
1045856.EcWSU1_02942	(+)				(ER)
1045856.EcWSU1_00068	+
1045856.EcWSU1_03519	(+)				(mitochondrial)
1045856.EcWSU1_03512		(>)
1045856.EcWSU1_04397		+
1045856.EcWSU1_04392		(>)
1045856.EcWSU1_03605	+
1045856.EcWSU1_03834	+
1045856.EcWSU1_02647				(PF06071)
1045856.EcWSU1_03464		(>)
1045856.EcWSU1_02248		+
1045856.EcWSU1_02246		(<)
1045856.EcWSU1_02027	(+)	(<)			not used
1045856.EcWSU1_03864	+
1045856.EcWSU1_03866	+
1045856.EcWSU1_00725				(PF13347)
1045856.EcWSU1_01385			+
1045856.EcWSU1_00478	+
1045856.EcWSU1_00477				(PF13347)
1045856.EcWSU1_00385	+
1045856.EcWSU1_00388	+
1045856.EcWSU1_00073	+				not used
1045856.EcWSU1_02223	+
1045856.EcWSU1_04543	+
1045856.EcWSU1_01455	+
1045856.EcWSU1_04382	+
1045856.EcWSU1_04388	+
1045856.EcWSU1_03671	(+)		+
1045856.EcWSU1_03672		(>)
1045856.EcWSU1_03383		(>)
1045856.EcWSU1_03455	+
1045856.EcWSU1_02387	(+)				(mitochondrial)
1045856.EcWSU1_02658				(PF06071)	not used
1045856.EcWSU1_03493	(+)	(>)
1045856.EcWSU1_03405	(+)
1045856.EcWSU1_02729	(+)				not used
1045856.EcWSU1_02724	(+)
1045856.EcWSU1_03922	(+)
1045856.EcWSU1_01625	(+)
1045856.EcWSU1_00714	(+)
1045856.EcWSU1_01391	(+)
1045856.EcWSU1_01398	(+)
1045856.EcWSU1_00910	(+)
1045856.EcWSU1_03057	(+)
1045856.EcWSU1_00502	(+)
1045856.EcWSU1_00665	(+)
1045856.EcWSU1_00049	(+)
1045856.EcWSU1_04283	(+)
1045856.EcWSU1_02620	(+)
1045856.EcWSU1_02621	(+)
1045856.EcWSU1_03808	(+)
1045856.EcWSU1_01276	(+)
1045856.EcWSU1_01704	(+)
1045856.EcWSU1_00457	(+)
1045856.EcWSU1_00459	(+)
1045856.EcWSU1_04116	(+)
1045856.EcWSU1_03652	(+)
1045856.EcWSU1_04292	(+)				not used
1045856.EcWSU1_04297	(+)
1045856.EcWSU1_03729	(+)
1045856.EcWSU1_03237	(+)
1045856.EcWSU1_02255	(+)
1045856.EcWSU1_02749	(+)
1045856.EcWSU1_02746	(+)
1045856.EcWSU1_01089	(+)
1045856.EcWSU1_01642	(+)
1045856.EcWSU1_00847	(+)
1045856.EcWSU1_00600	(+)
1045856.EcWSU1_01845	(+)
1045856.EcWSU1_04350	(+)
1045856.EcWSU1_03130	(+)
1045856.EcWSU1_03735	(+)
1045856.EcWSU1_01351	(+)
1045856.EcWSU1_02517	(+)
1045856.EcWSU1_02178	(+)
1045856.EcWSU1_02770	(+)
1045856.EcWSU1_01674	(+)
1045856.EcWSU1_01675	(+)
1045856.EcWSU1_00611	(+)
1045856.EcWSU1_00610	(+)
1045856.EcWSU1_00615	(+)
1045856.EcWSU1_00854	(+)
1045856.EcWSU1_01751	(+)
1045856.EcWSU1_02352	(+)
1045856.EcWSU1_01185	(+)
1045856.EcWSU1_00107	(+)
1045856.EcWSU1_00923	(+)
1045856.EcWSU1_00922	(+)
1045856.EcWSU1_00584	(+)
1045856.EcWSU1_02984	(+)
1045856.EcWSU1_04004	(+)				not used
1045856.EcWSU1_00033	(+)
1045856.EcWSU1_00032	(+)
1045856.EcWSU1_01946	(+)
1045856.EcWSU1_00326	(+)
1045856.EcWSU1_03105	(+)				not used
1045856.EcWSU1_02512	(+)
1045856.EcWSU1_02105	(+)
1045856.EcWSU1_02760	(+)
1045856.EcWSU1_02764	(+)
1045856.EcWSU1_03963	(+)
1045856.EcWSU1_02843	(+)
1045856.EcWSU1_01663	(+)
1045856.EcWSU1_01997	(+)
1045856.EcWSU1_01994	(+)				not used
1045856.EcWSU1_00828	(+)
1045856.EcWSU1_00130	(+)
1045856.EcWSU1_00959	(+)
1045856.EcWSU1_00486	(+)
1045856.EcWSU1_00557	(+)
1045856.EcWSU1_00551	(+)
1045856.EcWSU1_00009	(+)
1045856.EcWSU1_02880	(+)
1045856.EcWSU1_02881	(+)
1045856.EcWSU1_04019	(+)
1045856.EcWSU1_01534	(+)
1045856.EcWSU1_04330	(+)
1045856.EcWSU1_04338	(+)
1045856.EcWSU1_03028	(+)
1045856.EcWSU1_00013	(+)
1045856.EcWSU1_02372	(+)
1045856.EcWSU1_01375	(+)
1045856.EcWSU1_02571	(+)
1045856.EcWSU1_02084	(+)
1045856.EcWSU1_01179	(+)
1045856.EcWSU1_01301	(+)
1045856.EcWSU1_00545	(+)
1045856.EcWSU1_00549	(+)				not used
1045856.EcWSU1_00494	(+)
1045856.EcWSU1_03562	(+)
1045856.EcWSU1_00754	(+)
1045856.EcWSU1_03769	(+)
1045856.EcWSU1_03760	(+)
1045856.EcWSU1_03169	(+)
1045856.EcWSU1_03308	(+)
1045856.EcWSU1_03309	(+)
1045856.EcWSU1_03307	(+)
1045856.EcWSU1_04470	(+)
1045856.EcWSU1_02413	(+)				not used
1045856.EcWSU1_00856	(+)
1045856.EcWSU1_01959	(+)
1045856.EcWSU1_01456	(+)
1045856.EcWSU1_01311	(+)
1045856.EcWSU1_03045	(+)
1045856.EcWSU1_02953	(+)
1045856.EcWSU1_00579	(+)
1045856.EcWSU1_03702	(+)
1045856.EcWSU1_00971	(+)
1045856.EcWSU1_01551	(+)
1045856.EcWSU1_04315	(+)
1045856.EcWSU1_02540	(+)
1045856.EcWSU1_03579	(+)
1045856.EcWSU1_04440	(+)
1045856.EcWSU1_02317	(+)
1045856.EcWSU1_02138	(+)
1045856.EcWSU1_03406	(+)
1045856.EcWSU1_02041	(+)
1045856.EcWSU1_02048	(+)
1045856.EcWSU1_01890	(+)
1045856.EcWSU1_01145	(+)
1045856.EcWSU1_01815	(+)
1045856.EcWSU1_01870	(+)
1045856.EcWSU1_01765	(+)
1045856.EcWSU1_03463	(+)
1045856.EcWSU1_00366	(+)
1045856.EcWSU1_03740	(+)
1045856.EcWSU1_00216	(+)
1045856.EcWSU1_02360	(+)
1045856.EcWSU1_02302	(+)
1045856.EcWSU1_02431	(+)
1045856.EcWSU1_03747	(+)
1045856.EcWSU1_02052	(+)
1045856.EcWSU1_03940	(+)
1045856.EcWSU1_02141	(+)
1045856.EcWSU1_01154	(+)
1045856.EcWSU1_01152	(+)
1045856.EcWSU1_02140	(+)
1045856.EcWSU1_02931	(+)
1045856.EcWSU1_02932	(+)
1045856.EcWSU1_01572	(+)
1045856.EcWSU1_04168	(+)
1045856.EcWSU1_01577	(+)
1045856.EcWSU1_00512	(+)
1045856.EcWSU1_00517	(+)
1045856.EcWSU1_01771	(+)
1045856.EcWSU1_00356	(+)
1045856.EcWSU1_00198	(+)
1045856.EcWSU1_03554	(+)
1045856.EcWSU1_03550	(+)
1045856.EcWSU1_03159	(+)
1045856.EcWSU1_00721	(+)
1045856.EcWSU1_03888	(+)
1045856.EcWSU1_02206	(+)
1045856.EcWSU1_02687	(+)
1045856.EcWSU1_02113	(+)
1045856.EcWSU1_02449	(+)
1045856.EcWSU1_02069	(+)
1045856.EcWSU1_01471	(+)
1045856.EcWSU1_02920	(+)
1045856.EcWSU1_00762	(+)
1045856.EcWSU1_00164	(+)
1045856.EcWSU1_00507	(+)
1045856.EcWSU1_00985	(+)
1045856.EcWSU1_00690	(+)
1045856.EcWSU1_00348	(+)
1045856.EcWSU1_00233	(+)
1045856.EcWSU1_00054	(+)
1045856.EcWSU1_03634	(+)
1045856.EcWSU1_03631	(+)
1045856.EcWSU1_02328	(+)
1045856.EcWSU1_02073	(+)
1045856.EcWSU1_03854	(+)
1045856.EcWSU1_02583	(+)
1045856.EcWSU1_00455	(+)
1045856.EcWSU1_00098	(+)
1045856.EcWSU1_02918	(+)
1045856.EcWSU1_00159	(+)
1045856.EcWSU1_00221	(+)
1045856.EcWSU1_00537	(+)
1045856.EcWSU1_02868	(+)
1045856.EcWSU1_00407	(+)
1045856.EcWSU1_02139	(+)
1045856.EcWSU1_03081	(+)
1045856.EcWSU1_04220	(+)
1045856.EcWSU1_01360	(+)
1045856.EcWSU1_04539	(+)
1045856.EcWSU1_04408	(+)
1045856.EcWSU1_02666	(+)
1045856.EcWSU1_02667	(+)
1045856.EcWSU1_02260	(+)
1045856.EcWSU1_00879	(+)
1045856.EcWSU1_03844	(+)
1045856.EcWSU1_03841	(+)
1045856.EcWSU1_03848	(+)
1045856.EcWSU1_02714	(+)
1045856.EcWSU1_04194	(+)
1045856.EcWSU1_01494	(+)
1045856.EcWSU1_02856	(+)
1045856.EcWSU1_02909	(+)				not used
1045856.EcWSU1_01924	(+)
1045856.EcWSU1_02877	(+)
1045856.EcWSU1_02485	(+)
1045856.EcWSU1_00411	(+)				not used
1045856.EcWSU1_01430	(+)
1045856.EcWSU1_04421	(+)
1045856.EcWSU1_01620	(+)
1045856.EcWSU1_02103	(+)
1045856.EcWSU1_04427	(+)
1045856.EcWSU1_04525	(+)
1045856.EcWSU1_04521	(+)
1045856.EcWSU1_02679	(+)
1045856.EcWSU1_03471	(+)
1045856.EcWSU1_03871	(+)
1045856.EcWSU1_02705	(+)
1045856.EcWSU1_01858	(+)
1045856.EcWSU1_02492	(+)
1045856.EcWSU1_01607	(+)
1045856.EcWSU1_01601	(+)				not used
1045856.EcWSU1_00880	(+)
1045856.EcWSU1_02801	(+)				not used
1045856.EcWSU1_04097	(+)
1045856.EcWSU1_01339	(+)
1045856.EcWSU1_02365	(+)
1045856.EcWSU1_00469	(+)
1045856.EcWSU1_00952	(+)
1045856.EcWSU1_03489	(+)
1045856.EcWSU1_01420	(+)
1045856.EcWSU1_04218	(+)
1045856.EcWSU1_03571	(+)
1045856.EcWSU1_03283	(+)
1045856.EcWSU1_02640	(+)
1045856.EcWSU1_03461	(+)
1045856.EcWSU1_04425	(+)
1045856.EcWSU1_02240	(+)
1045856.EcWSU1_02022	(+)
1045856.EcWSU1_02029	(+)				not used
1045856.EcWSU1_02736	(+)
1045856.EcWSU1_01571	(+)
1045856.EcWSU1_00096	(+)
1045856.EcWSU1_03704	(+)
1045856.EcWSU1_01432	(+)
1045856.EcWSU1_00194	(+)
1045856.EcWSU1_01418	(+)
1045856.EcWSU1_00278	(+)
1045856.EcWSU1_00744	(+)
1045856.EcWSU1_04237	(+)				not used
1045856.EcWSU1_03072	(+)
1045856.EcWSU1_03676	(+)				not used
1045856.EcWSU1_03254	(+)
1045856.EcWSU1_03259	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.4 (4/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================