Effective results for Paenibacillus polymyxa M1 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 37 proteins (4 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1052684.PPM_2437(PF00251) (PF08244)(mitochondrial); (plastid)
1052684.PPM_0699(PF00251) (PF08244)(mitochondrial)
1052684.PPM_2741(PF14040)ER
1052684.PPM_3205(PF14040)ER
1052684.PPM_1330(PF06925)(mitochondrial)
1052684.PPM_2475(PF16875) (PF16874)
1052684.PPM_2381(PF00251) (PF08244)
1052684.PPM_0727(PF16875) (PF16874)
1052684.PPM_2298(PF16875) (PF16874)
1052684.PPM_0551(PF16875) (PF16874)
1052684.PPM_0313(PF00251) (PF08244)
1052684.PPM_2439(PF00251) (PF08244)
1052684.PPM_2438(PF00251) (PF08244)
1052684.PPM_0970(PF00251) (PF08244)
1052684.PPM_0969(PF00251) (PF08244)
1052684.PPM_0230(PF13518)
1052684.PPM_1170PF02893
1052684.PPM_0247(PF08271)
1052684.PPM_3045(PF03266)
1052684.PPM_3017(PF13518)
1052684.PPM_1471PF12640
1052684.PPM_1507(PF01885)
1052684.PPM_1509(PF13518)
1052684.PPM_1463(PF01885)
1052684.PPM_1519(PF13518)
1052684.PPM_1070PF01857
1052684.PPM_0612(PF10435)
1052684.PPM_1333(PF00707)
1052684.PPM_1442(PF00707)
1052684.PPM_2953(PF13518)
1052684.PPM_2434(PF00165)
1052684.PPM_1041(PF00251)
1052684.PPM_0574(PF06925)
1052684.PPM_2448(PF06925)
1052684.PPM_1495PF12640
1052684.PPM_2450(PF06925)
1052684.PPM_2713(PF13518)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================