Effective results for Megasphaera elsdenii DSM 20460 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 41 proteins (2 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1064535.MELS_2085(PF14566)ER
1064535.MELS_1990(PF01637)(mitochondrial)
1064535.MELS_0324PF00349 PF03727
1064535.MELS_0384PF00349 PF03727
1064535.MELS_2044(PF10371)
1064535.MELS_1938(PF13597)
1064535.MELS_1939(PF13597)
1064535.MELS_1937(PF13276)
1064535.MELS_1935(PF09458)
1064535.MELS_1886(PF13276)
1064535.MELS_0987(PF10371)
1064535.MELS_0562(PF09861)
1064535.MELS_1576(PF01487)
1064535.MELS_0954(PF01969)
1064535.MELS_0771(PF13276)
1064535.MELS_0263(PF01880)
1064535.MELS_1963(PF04098)
1064535.MELS_0891(PF13276)
1064535.MELS_1222(PF13276)
1064535.MELS_0101(PF09861)
1064535.MELS_1955(PF13276)
1064535.MELS_2202(PF13597)
1064535.MELS_1313(PF04970)
1064535.MELS_0049(PF13276)
1064535.MELS_0593(PF13276)
1064535.MELS_0669(PF01969)
1064535.MELS_0460(PF01880)
1064535.MELS_1323(PF08123)
1064535.MELS_1322(PF04970)
1064535.MELS_0275(PF01487)
1064535.MELS_0697(PF01637)
1064535.MELS_0874(PF01637)
1064535.MELS_0260(PF10371)
1064535.MELS_2220(PF09861)
1064535.MELS_1607(PF13276)
1064535.MELS_0804(PF13276)
1064535.MELS_0806(PF12646)
1064535.MELS_0248(PF09861)
1064535.MELS_2089(PF13276)
1064535.MELS_0826(PF02317)
1064535.MELS_0825(PF02317)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================