Effective results for Prochlorococcus marinus subsp. marinus str. CCMP1375 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 87 eukaryotic-like domains, contained in 107 proteins (12 high, 95 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
167539.Pro0459				(PF16639) (PF01333)	ER
167539.Pro1097				(PF01789)	ER
167539.Pro0930				(PF12159)	ER
167539.Pro0931				(PF10693)	ER
167539.Pro0257				(PF01716)	ER
167539.Pro0267				(PF07444)	ER
167539.Pro0781				(PF09493)	(mitochondrial)
167539.Pro0467				(PF02507)	ER
167539.Pro0461				(PF11267)	mitochondrial
167539.Pro0077				(PF07444)	ER; (ER)
167539.Pro1494				(PF00283)	ER
167539.Pro1810				(PF04481)	(mitochondrial)
167539.Pro1804				(PF01737)	ER
167539.Pro1873				(PF16166)	ER
167539.Pro1601				(PF11805)	ER
167539.Pro0500				(PF11016)	ER
167539.Pro1739				(PF12046)	ER
167539.Pro0507				(PF13326)	(ER)
167539.Pro0572				(PF10716)	ER
167539.Pro0573				(PF11460)	ER
167539.Pro0387				(PF08853)	(mitochondrial)
167539.Pro0354				PF00421	(mitochondrial)
167539.Pro0286				(PF12600)	ER
167539.Pro0586				(PF06298)	ER; not used
167539.Pro0328				(PF00284) (PF00283)
167539.Pro1406				(PF11317)	(ER)
167539.Pro0131				(PF05421)	(plastid)
167539.Pro0304				(PF02533)	(ER); not used
167539.Pro0466				(PF01701)	ER; not used
167539.Pro0972				(PF11152)	(plastid)
167539.Pro0357				(PF05151)	ER; not used
167539.Pro0284				(PF02468)	ER; not used
167539.Pro0285				(PF02532)	ER; not used
167539.Pro1763				(PF11623)
167539.Pro1169				PF00421
167539.Pro1167				PF00421
167539.Pro1361				(PF13355)
167539.Pro0169				(PF11371)
167539.Pro0168				(PF10664)
167539.Pro0292				(PF11378)
167539.Pro0765				(PF11282)
167539.Pro1880				(PF00862)
167539.Pro1174				PF00421
167539.Pro0885				PF00421
167539.Pro0886				(PF13911)
167539.Pro0110				(PF00504)	not used
167539.Pro0330				PF02419	not used
167539.Pro0628				(PF10544)
167539.Pro0752				(PF11947)
167539.Pro0249				(PF10063)
167539.Pro1566				(PF00504)	not used
167539.Pro1411				(PF08855)
167539.Pro1748				(PF05996)
167539.Pro1749				(PF05996)
167539.Pro0329				(PF00283)	not used
167539.Pro0819				(PF05996)
167539.Pro0991				(PF11210)
167539.Pro0261				(PF04483)
167539.Pro0866				(PF12527)
167539.Pro1030				(PF11347)
167539.Pro0129				(PF12095)
167539.Pro0783				PF00421
167539.Pro0871				(PF12452)
167539.Pro1028				(PF11833)
167539.Pro1025				(PF12049)
167539.Pro0062				(PF07720)
167539.Pro1650				(PF11998)
167539.Pro0078				(PF00504)
167539.Pro0076				(PF06596)	not used
167539.Pro0696				(PF10544)
167539.Pro1007				(PF09493)
167539.Pro1498				(PF01744)
167539.Pro1837				(PF01947)
167539.Pro1678				(PF00796)	not used
167539.Pro1679				(PF02605)
167539.Pro1672				(PF00223)
167539.Pro1673				(PF00223)
167539.Pro1253				(PF02392)
167539.Pro1255				PF00421
167539.Pro0451				(PF08854)
167539.Pro0331				(PF01788)
167539.Pro1249				(PF08041)	not used
167539.Pro0950				(PF09353)
167539.Pro0982				(PF04483)
167539.Pro0940				(PF11360)
167539.Pro0894				(PF06799)
167539.Pro0892				PF00421
167539.Pro1593				(PF04839)
167539.Pro1733				(PF02531)
167539.Pro1288				PF00421
167539.Pro0371				(PF02427)
167539.Pro1450				PF00421
167539.Pro1638				(PF04983)
167539.Pro1639				(PF04983)
167539.Pro1637				(PF00504)	not used
167539.Pro1142				(PF02529)	not used
167539.Pro0141				(PF11910)
167539.Pro0369				(PF12899)
167539.Pro1717				(PF10999)
167539.Pro1714				(PF12617)
167539.Pro1713				(PF11909)
167539.Pro1627				(PF11341)
167539.Pro0353				(PF01405)	not used
167539.Pro0283				(PF00737)
167539.Pro0776				(PF07082)
167539.Pro0918				PF03742	not used
167539.Pro0919				(PF11264)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================