Effective results for Colwellia psychrerythraea 34H (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 55 proteins (2 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
167879.CPS_2646(PF04450)ER
167879.CPS_4627(PF02225)ER
167879.CPS_1892(PF02239)mitochondrial
167879.CPS_1891(PF01094)mitochondrial
167879.CPS_2654(PF04450)ER
167879.CPS_2134(PF16187)ER
167879.CPS_0989(PF02390)ER
167879.CPS_4223(PF02239)ER
167879.CPS_4220(PF02239)ER
167879.CPS_4229(PF02239)ER
167879.CPS_3367(PF01625)ER
167879.CPS_3091(PF02225)ER
167879.CPS_3335(PF02225)ER
167879.CPS_1694(PF11852)ER
167879.CPS_3909(PF02225)(ER)
167879.CPS_0751(PF02225)ER
167879.CPS_4562PF00354ER
167879.CPS_3833(PF08732)(plastid)
167879.CPS_0525(PF13444)(mitochondrial)
167879.CPS_0549(PF00026)(plastid)
167879.CPS_0753(PF02225)(ER)
167879.CPS_1416(PF10544)(mitochondrial)
167879.CPS_3721(PF00332)(mitochondrial)
167879.CPS_2390(PF02685)
167879.CPS_4396(PF13444)
167879.CPS_1278PF06552
167879.CPS_0797(PF13444)
167879.CPS_1297(PF10544)
167879.CPS_3155(PF16187)
167879.CPS_0982(PF02685)
167879.CPS_1103(PF02482)
167879.CPS_0524(PF13444)
167879.CPS_0996(PF11852)
167879.CPS_1006(PF02390)
167879.CPS_4817(PF01625)
167879.CPS_2175(PF13127)
167879.CPS_3429(PF02460)
167879.CPS_1639(PF08695)
167879.CPS_3069(PF01625)
167879.CPS_3068(PF01625)
167879.CPS_2638(PF01625)
167879.CPS_0976(PF02685)
167879.CPS_1350(PF02482)
167879.CPS_2842(PF16011)
167879.CPS_2843(PF03848)
167879.CPS_0247(PF02685)
167879.CPS_4110(PF13875)
167879.CPS_3710(PF02685)
167879.CPS_2619(PF03848)
167879.CPS_2871(PF02225)
167879.CPS_4544(PF02482)
167879.CPS_1535(PF02482)
167879.CPS_0721(PF00036)
167879.CPS_3720(PF00332)
167879.CPS_4146(PF02390)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================