Effective results for Staphylococcus epidermidis ATCC 12228 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 39 proteins (14 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
176280.SE2231				PF05257	ER
176280.SE1952				PF11070	ER
176280.SE1489				PF05257	(ER)
176280.SE1803				(PF00344)	(mitochondrial)
176280.SE2108				PF05257	ER
176280.SE0537				PF05257	ER; (ER)
176280.SE0870				PF05257	ER
176280.SE0092				(PF13787)	(ER)
176280.SE0097				(PF13787)	ER
176280.SE0078				(PF03596)	ER
176280.SE0048				PF11070	ER
176280.SE1876				PF05257	ER
176280.SE0028				PF11070	ER
176280.SE1515				(PF03596)	(ER)
176280.SE2124				PF05257	(ER)
176280.SE2248				(PF00344)	mitochondrial
176280.SE0433				PF05257	(mitochondrial)
176280.SE1872				PF05257	(ER)
176280.SE2319				PF05257
176280.SE1455				(PF02371)
176280.SE1453				(PF02371)
176280.SE2158				(PF06039)
176280.SE1943				(PF06039)
176280.SE0687				(PF02371)
176280.SE2260				(PF02371)
176280.SE0519				(PF05495)
176280.SE1900				(PF02371)
176280.SE2079				(PF02371)
176280.SE2000				PF08771
176280.SE0667				(PF02371)
176280.SE1728				(PF03630)
176280.SE1721				(PF02371)
176280.SE0675				(PF02371)
176280.SE0266				(PF06039)
176280.SE0282				(PF02371)
176280.SE0628				(PF02371)
176280.SE1983				(PF02371)
176280.SE0051				(PF02371)
176280.SE0157				(PF06039)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================