Effective results for Shigella flexneri 2a str. 301 (eggnog40)

Summary

Number of putative secreted proteins: 1139
- Predicted by EffectiveT3: 254 (high confidence), 301 (low confidence)
- Predicted by EffectiveCCBD: 35 within, 24 before, 35 behind expected region 25..70aa
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 500 proteins (414 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
198214.CP0117PF13276 PF00665(mitochondrial); mitochondrial
198214.SF0189+ER
198214.SF0184(PF05708)ER
198214.SF0673PF01527ER
198214.SF0678PF00665(mitochondrial); plastid
198214.SF2048PF00665(mitochondrial); plastid
198214.SF3512PF01527(ER)
198214.SF3202(PF03222)(ER); ER
198214.SF2827+ER
198214.SF1023PF13276 PF00665(mitochondrial)
198214.CP0056PF00665(mitochondrial)
198214.SF0862PF00665(mitochondrial); plastid
198214.SF1200(PF01204)ER
198214.SF0245PF01527(ER)
198214.SF4185PF01527(ER)
198214.SF4344+mitochondrial; (mitochondrial)
198214.SF3233+ER
198214.SF1907PF00665(mitochondrial); plastid
198214.SF1052PF00665(mitochondrial); plastid
198214.SF1054PF01527(ER)
198214.SF1057PF00665(mitochondrial)
198214.SF2011PF01527(ER)
198214.SF0476PF00665(mitochondrial)
198214.SF1872(PF05708)ER
198214.SF3753(PF03222)(ER)
198214.CP0189PF00665(mitochondrial)
198214.CP0184PF00665(mitochondrial)
198214.SF1768PF01527(ER)
198214.SF1049PF00665(mitochondrial)
198214.SF2069PF00665mitochondrial
198214.SF1463PF01527(ER)
198214.SF0319PF00665(mitochondrial)
198214.SF2065PF00665(mitochondrial)
198214.SF0228PF00665(mitochondrial)
198214.SF4097PF01527ER
198214.CP0004+ER
198214.SF1075(>)mitochondrial
198214.CP0081PF00665(mitochondrial)
198214.CP0087PF00665(mitochondrial)
198214.SF2478+ER
198214.CP0232PF00665(mitochondrial)
198214.SF0300PF00665(mitochondrial)
198214.SF0308(PF01609)mitochondrial; (mitochondrial)
198214.SF1091+(mitochondrial); (plastid)
198214.SF0236(>)ER
198214.SF4223PF00665(mitochondrial); plastid
198214.SF2313PF01527ER; mitochondrial
198214.SF0516PF00665(mitochondrial); plastid
198214.SF3805PF01527(ER)
198214.SF0933PF01527(ER)
198214.SF2684PF13276 PF00665(mitochondrial)
198214.SF0683PF00665(mitochondrial); plastid
198214.SF0209PF01527(ER)
198214.CP0067PF00665(mitochondrial)
198214.SF2306PF00665(mitochondrial); plastid
198214.SF2873PF01527(ER)
198214.SF3275(>)ER
198214.SF2058+ER
198214.SF3873PF01527(ER)
198214.SF2694PF01527(ER)
198214.CP0172PF00665(mitochondrial)
198214.SF1343PF01527(ER)
198214.SF0699+(ER)
198214.SF3642+(ER)
198214.SF3465+ER
198214.SF3462+mitochondrial; (mitochondrial)
198214.SF2842(<)(ER)
198214.SF3006PF13276 PF00665(mitochondrial)
198214.SF3260+(mitochondrial)
198214.SF1422+ER
198214.SF0434+ER
198214.CP0165PF13276mitochondrial; (mitochondrial)
198214.SF0598(>)ER
198214.SF2031+(ER)
198214.SF3676+(mitochondrial)
198214.SF2984PF01527ER
198214.SF2857PF13276 PF00665(mitochondrial)
198214.SF3075+ER
198214.SF2212PF00665(mitochondrial)
198214.SF1165PF01527(ER)
198214.SF1167PF13276 PF00665(mitochondrial)
198214.SF0168(>)ER
198214.CP0124+ER
198214.SF1625+ER
198214.SF2538+ER
198214.CP0106PF01527(ER)
198214.CP0039PF00665(mitochondrial)
198214.CP0030(+)PF03400mitochondrial
198214.SF1370PF00665(mitochondrial)
198214.SF0480PF01527(ER)
198214.SF0398(>)ER
198214.SF4015(PF05708)ER
198214.SF3614+ER
198214.SF1789+ER
198214.SF3431PF01527ER
198214.SF3120(PF01204)ER
198214.SF3722PF01527ER
198214.SF2237(>)ER
198214.SF1546+ER
198214.CP0009++plastid
198214.CP0007PF13276(mitochondrial); plastid
198214.CP0005+mitochondrial
198214.SF1622+ER
198214.SF0960PF01527(ER)
198214.SF0491PF00665(mitochondrial)
198214.SF0031(>)ER
198214.SF3040(<)(ER)
198214.SF4028(PF01228)(mitochondrial)
198214.SF1605PF00665(mitochondrial); plastid
198214.SF2552+ER
198214.SF3469(>)ER
198214.SF1800PF00665(mitochondrial); plastid
198214.SF0557+ER
198214.SF0958+(mitochondrial)
198214.SF1396(>)ER
198214.SF1159(PF13436)(ER)
198214.SF2602+(ER)
198214.SF4254+ER
198214.SF3705PF00665(mitochondrial)
198214.SF3709PF01527ER
198214.SF0879PF01527(ER)
198214.SF1841+ER
198214.SF1838PF00665(mitochondrial); plastid
198214.SF2615PF01527(ER)
198214.SF0831PF01527(ER)
198214.SF2262+(ER); ER
198214.SF0050(<)ER
198214.SF4285PF13276 PF00665plastid
198214.SF3711+(mitochondrial)
198214.SF3083PF01527(ER)
198214.SF2972(PF03050)(ER)
198214.SF4330+ER
198214.SF1953(PF03222)ER; (ER)
198214.SF1006(PF00328)ER
198214.SF2025PF13276 PF00665plastid
198214.CP0075PF13384(mitochondrial); (plastid)
198214.SF1131+(mitochondrial)
198214.SF0190+mitochondrial
198214.SF2427PF00665(mitochondrial); plastid
198214.CP0269PF00665(mitochondrial); plastid
198214.SF3915+ER
198214.SF3215+ER
198214.SF3185PF01527(ER)
198214.SF1722(>)(ER)
198214.SF3988PF01527ER
198214.SF1925PF00665(mitochondrial); plastid
198214.SF1580PF01527(mitochondrial)
198214.SF1587PF01527(ER)
198214.SF0982(PF00328)ER
198214.SF0672PF13276 PF00665
198214.SF0076+(plastid)
198214.SF0940+(plastid)
198214.SF4194+(plastid)
198214.SF4359(+)PF13276 PF00665
198214.SF3374+(>)
198214.SF1251(+)++
198214.SF3773+(plastid)
198214.SF3513PF13276 PF00665
198214.SF3516(+)PF13276 PF00665
198214.SF3432PF13276 PF00665
198214.SF3173+(plastid)
198214.SF1732+(plastid)
198214.SF3998(+)ER
198214.SF1938+(mitochondrial)
198214.SF1847(+)PF13276 PF00665
198214.SF2007(+)PF13276 PF00665
198214.SF1440(+)PF13276 PF00665
198214.SF2640(+)ER
198214.SF0866(+)PF13276 PF00665
198214.SF0884(+)PF13276 PF00665
198214.CP0207PF13276 PF00665
198214.SF0882(+)PF13276 PF00665
198214.SF2681+(plastid)
198214.SF3549+(plastid)
198214.SF0241(+)PF13276 PF00665
198214.SF0240(+)PF13276 PF00665
198214.SF0246+(plastid)
198214.SF0244PF13276 PF00665
198214.SF4184PF01527 PF13384
198214.SF4186PF13276 PF00665
198214.SF4347++
198214.SF4342+(plastid)
198214.SF1966+plastid
198214.SF3742PF13384 PF01527
198214.SF2348+(plastid)
198214.SF3533+(plastid)
198214.SF1901(+)PF13276 PF00665
198214.SF1055PF13276 PF00665
198214.SF2010PF13276 PF00665
198214.SF2012+(plastid)
198214.SF3831+(plastid)
198214.SF0479PF13276 PF00665
198214.SF1475(+)mitochondrial
198214.SF0878PF13276 PF00665
198214.SF0895(+)PF13276 PF00665
198214.SF0255+(plastid)
198214.SF2633(+)ER
198214.SF4372+(ER)
198214.SF4155(+)mitochondrial
198214.SF3750(+)PF13276 PF00665
198214.SF3756+(plastid)
198214.SF2930+(plastid)
198214.SF2791+(plastid)
198214.SF1686+(mitochondrial)
198214.SF1464PF13276 PF00665
198214.SF2463+plastid
198214.SF0317(+)PF13276 PF00665
198214.CP0223(<)(PF03050)
198214.SF2062(+)PF13276 PF00665
198214.SF0791(+)PF13276 PF00665
198214.SF4367+(plastid)
198214.SF4360(+)PF13276 PF00665
198214.SF4147(+)+(plastid)
198214.SF4096PF13276 PF00665
198214.SF3036+(mitochondrial)
198214.SF2923+(plastid)
198214.SF3329+(mitochondrial)
198214.SF3322PF01527 PF13384
198214.SF3256(+)PF13276 PF00665
198214.SF2257+(plastid)
198214.SF3813(<)+
198214.CP0157PF13276 PF00665
198214.SF0312(+)PF13276 PF00665
198214.SF0303(+)PF13276 PF00665
198214.SF1253PF13276 PF00665
198214.SF4310+(mitochondrial)
198214.SF4316+(plastid)
198214.SF4423(>)(mitochondrial)
198214.SF4041+(plastid)
198214.SF1818+(plastid)
198214.SF2314PF13276 PF00665
198214.SF3307+(plastid)
198214.SF3305(+)(ER)
198214.SF1665PF13276 PF00665
198214.SF3806PF13276 PF00665
198214.SF3802(+)PF13276 PF00665
198214.SF0932PF13276 PF00665
198214.SF0938+(plastid)
198214.SF1407+(plastid)
198214.SF1791(+)PF13276 PF00665
198214.SF1799PF01527(mitochondrial)
198214.SF0680(+)PF13276 PF00665
198214.SF0684(PF01695)(mitochondrial)
198214.SF1243+(plastid)
198214.SF1339(+)PF13276 PF00665
198214.SF4300+(plastid)
198214.SF4120+(plastid)
198214.CP0126+(plastid)
198214.SF4236+(plastid)
198214.SF3013+(plastid)
198214.SF3011+(plastid)
198214.SF3655+(plastid)
198214.SF3658(+)+PF09612
198214.SF3309(+)(mitochondrial); mitochondrial
198214.SF2872PF13276 PF00665
198214.SF2871+(plastid)
198214.SF2052(+)PF13276 PF00665
198214.SF3872PF13276 PF00665
198214.SF1315+(plastid)
198214.SF2697+(mitochondrial)
198214.SF2693PF13276 PF00665
198214.SF1500+(plastid)
198214.SF1857+plastid
198214.SF3640+(mitochondrial)
198214.SF0210PF13276 PF00665
198214.SF1342PF13276 PF00665
198214.SF0697(+)PF13276 PF00665
198214.CP0206PF13384 PF01527
198214.SF4204+(plastid)
198214.SF2208+(plastid)
198214.SF1643+(plastid)
198214.SF3869+(ER)
198214.SF2195+(plastid)
198214.SF1429(+)PF13276 PF00665
198214.SF2428PF01527(mitochondrial)
198214.SF3735+(plastid)
198214.SF0596+(plastid)
198214.SF1002+(plastid)
198214.SF2757(+)PF13276 PF00665
198214.SF1352+(plastid)
198214.SF1357(+)PF13276 PF00665
198214.SF4329++
198214.SF4218(+)PF13276 PF00665
198214.SF4215+(plastid)
198214.SF4213++
198214.SF3671+(plastid)
198214.SF2985PF13276 PF00665
198214.SF3581(+)(ER)
198214.SF2182(+)PF13276 PF00665
198214.SF2183+(plastid)
198214.SF1745+(plastid)
198214.CP0114PF13384 PF01527
198214.CP0026PF00665(plastid)
198214.SF0763(+)(mitochondrial)
198214.SF1164PF13276 PF00665
198214.SF2793+(plastid)
198214.SF4048(+)mitochondrial
198214.SF0019+(plastid)
198214.SF3590PF13276 PF00665
198214.SF2078+(plastid)
198214.SF3286+(mitochondrial)
198214.SF3540+(plastid)
198214.SF2530+(plastid)
198214.SF2798(+)(mitochondrial)
198214.SF1197+(plastid)
198214.SF1754+(plastid)
198214.SF2153+(plastid)
198214.CP0107(+)PF13276 PF00665
198214.CP0105PF13276 PF00665
198214.SF1285+(plastid)
198214.SF1579PF13276 PF00665
198214.SF1378PF13276 PF00665
198214.SF4336+(plastid)
198214.SF3725+(plastid)
198214.SF3726++
198214.SF3721PF13276 PF00665
198214.SF3962+(plastid)
198214.SF1767PF13276 PF00665
198214.SF3945+(plastid)
198214.SF1542(+)PF13276 PF00665
198214.SF1540+(plastid)
198214.CP0008(+)PF13276 PF00665
198214.SF0961PF13276 PF00665
198214.SF1387(+)PF13276 PF00665
198214.SF1381PF01527 PF13384
198214.SF0490(+)PF13276 PF00665
198214.SF0494PF13276 PF00665
198214.SF0499+(plastid)
198214.SF4396+(plastid)
198214.SF3600+(plastid)
198214.SF3605(<)
198214.CP0094++
198214.SF1059(+)PF13276 PF00665
198214.SF2951+(plastid)
198214.SF3135+(plastid)
198214.SF1975+(mitochondrial)
198214.SF2392+(mitochondrial)
198214.SF2391(+)(mitochondrial)
198214.CP0129+(PF07720)
198214.CP0121PF00665(plastid)
198214.SF2177+(plastid)
198214.SF1559(+)PF13276 PF00665
198214.SF0820+(>)
198214.SF1550PF13276 PF00665
198214.SF1805(+)PF13276 PF00665
198214.SF1801PF13276 PF00665
198214.CP0013(+)PF03400(plastid)
198214.SF1038(+)PF13276 PF00665
198214.SF0013(+)ER
198214.SF0376PF01527 PF13384
198214.SF3638+(plastid)
198214.SF3708PF13276 PF00665
198214.SF3567+(plastid)
198214.SF2548(+)PF13276 PF00665
198214.SF1945+(plastid)
198214.SF1839PF01527(mitochondrial)
198214.SF0544+(mitochondrial)
198214.CP0063++
198214.CP0022++
198214.SF1493+(plastid)
198214.SF2616PF13276 PF00665
198214.SF0834+(plastid)
198214.SF0830PF13276 PF00665
198214.CP0254(+)PF13276 PF00665
198214.SF3983(<)(plastid)
198214.SF4287+(plastid)
198214.SF3620+(plastid)
198214.SF3624+(plastid)
198214.SF3570+(ER)
198214.SF3084PF13276 PF00665
198214.SF3085+(plastid)
198214.SF0465+(plastid)
198214.SF3156+(PF03222)
198214.SF3881+(plastid)
198214.SF2417+(plastid)
198214.SF2118+(plastid)
198214.SF3973+(plastid)
198214.SF1758+(plastid)
198214.SF1589(+)PF13276 PF00665
198214.SF0537(>)plastid
198214.SF1005++
198214.CP0211PF13384 PF01527
198214.SF1480(+)(mitochondrial)
198214.SF0448+(plastid)
198214.SF2621PF13276 PF00665
198214.SF0664(+)PF13276 PF00665
198214.CP0265++
198214.SF1941+(plastid)
198214.SF0261+(plastid)
198214.SF0263+(mitochondrial)
198214.SF2969+(mitochondrial)
198214.SF2962(>)(ER)
198214.SF3146(>)(mitochondrial)
198214.SF1511+(plastid)
198214.SF1366+(plastid)
198214.SF3180+(plastid)
198214.SF1725+(plastid)
198214.SF3987PF13276 PF00665
198214.SF2291++
198214.SF1928(+)PF13276 PF00665
198214.SF0520(+)PF13276 PF00665
198214.SF1588PF13276 PF00665
198214.SF2037PF01527 PF13384
198214.SF2033(+)PF13276 PF00665
198214.SF1535+(plastid)
198214.SF0290+(plastid)
198214.SF0295(+)PF13276 PF00665
198214.SF0858PF01527 PF13384
198214.SF0677PF01527
198214.SF0191+
198214.SF0074+not used
198214.SF0077PF03400
198214.SF4195+
198214.SF4193PF03400
198214.SF2049PF01527
198214.SF4358PF01527
198214.CP0092+
198214.CP0093+
198214.SF3511+
198214.SF3515PF01527
198214.SF3518PF03400
198214.SF3170+
198214.SF3174PF03400
198214.SF3179PF03400
198214.SF3195(+)(mitochondrial)
198214.SF3192+
198214.SF2825+
198214.SF1730PF03400
198214.SF1733PF03400
198214.SF1933(+)plastid
198214.SF0517PF01527
198214.SF1843PF01527
198214.SF0515+
198214.SF1846PF01527
198214.SF1844PF00665
198214.SF1024PF01527
198214.SF2768(>)
198214.SF0519PF01527
198214.CP0058PF01527
198214.CP0059(>)
198214.SF2008PF01527
198214.CP0051PF03400
198214.CP0055PF01527
198214.SF2709+
198214.SF0464PF03400
198214.SF1111+
198214.SF0422+
198214.SF2641(PF01228)
198214.SF0865PF01527
198214.SF0863PF01527
198214.SF0860(PF03050)
198214.SF1590PF01527
198214.SF3051(>)
198214.CP0208PF01527
198214.SF0888+
198214.SF0885PF01527
198214.SF0881PF01527
198214.CP0204(PF03050)
198214.SF1202+
198214.SF2683(+)PF01527
198214.SF0249(>)
198214.SF0242PF01527
198214.SF0247PF03400
198214.SF0047+
198214.CP0065PF03400
198214.SF4182(PF03050)
198214.SF4340+
198214.SF4341PF03400
198214.SF3694+
198214.CP0142+
198214.SF4163+
198214.SF3740(PF03050)
198214.SF3749PF01527
198214.SF2349PF03400
198214.SF3522PF03400
198214.CP0199(<)
198214.CP0194+
198214.SF3532PF03400
198214.SF1905+
198214.SF1902PF03400
198214.SF1900PF01527
198214.SF1908PF01527
198214.SF0500PF03400
198214.SF1058PF01527
198214.SF1051PF01527
198214.SF1053+
198214.SF1056PF01527
198214.SF3832PF03400
198214.SF0477PF01527
198214.SF1968(+)+
198214.SF1471(PF01609)
198214.SF2651(PF01609)
198214.SF2656(PF01609)
198214.SF2659+
198214.SF0898(PF01228)
198214.SF0896PF01527
198214.CP0213(PF03050)
198214.CP0214(PF01695)
198214.SF0096(<)
198214.SF0090+
198214.SF2109(>)
198214.SF0098+
198214.SF0254PF03400
198214.SF1302(<)
198214.SF4157+
198214.SF4156+
198214.SF3504+
198214.SF3757PF03400
198214.SF3223+
198214.SF2792PF03400
198214.SF2063PF01527
198214.SF2802+
198214.SF2809(PF01609)
198214.SF3536+
198214.SF3537PF03400
198214.CP0182+
198214.CP0183PF01527
198214.CP0180PF01527
198214.CP0181+
198214.SF2243+
198214.SF1919PF00665
198214.SF2064PF01527
198214.SF1687+
198214.SF3827(PF01609)
198214.SF2666(+)+
198214.SF2468(+)(mitochondrial)
198214.SF1867(+)(plastid)
198214.CP0226+
198214.CP0222(+)(PF03050)
198214.SF0313PF01527
198214.CP0220PF03400
198214.SF0318PF01527
198214.SF1262+
198214.SF0790PF01527
198214.CP0137+
198214.SF0227PF01527
198214.SF1812PF03400
198214.SF4361PF01527
198214.SF0133PF03400
198214.SF4363+
198214.SF4144PF03400
198214.SF4412+
198214.SF2668+
198214.SF4148(+)(mitochondrial)
198214.SF3035(PF03738)
198214.SF3031+
198214.SF2922PF03400
198214.SF2929PF03400
198214.CP0002+
198214.SF3325PF13384
198214.SF3324(PF03050)
198214.SF3255PF01527
198214.SF2819+
198214.SF2815+
198214.SF2810+
198214.SF0998(>)
198214.SF2492(>)
198214.SF2256PF03400
198214.SF1077+
198214.SF2789PF03400
198214.SF2073(+)(ER)
198214.CP0080PF01527
198214.SF2077PF03400
198214.CP0085(PF01695)
198214.CP0084(PF01609)
198214.CP0089(PF01695)
198214.CP0088PF01527
198214.SF0414+
198214.CP0158PF01527
198214.CP0150+
198214.SF1892+
198214.SF2480(>)
198214.CP0231PF01527
198214.SF0302PF01527
198214.SF0301PF01527
198214.SF1252PF01527
198214.SF1092+
198214.SF4315PF03400
198214.SF3851(>)
198214.SF4221PF03400
198214.SF4222PF01527
198214.SF4047(>)
198214.SF4042PF03400
198214.SF3244+
198214.SF2860+
198214.SF2862PF01527
198214.SF2864PF00665
198214.SF1840+
198214.SF2268(+)(mitochondrial)
198214.SF3654PF03400
198214.SF2047+
198214.CP0091(PF01609)
198214.SF1666PF01527
198214.SF3801PF01527
198214.SF3808(PF01609)
198214.SF2162(PF01609)
198214.SF0939PF03400
198214.SF1406PF03400
198214.SF2682PF03400
198214.SF1409+
198214.SF1792PF01527
198214.CP0054+
198214.SF2441+
198214.SF2444(+)(mitochondrial)
198214.SF1880+
198214.SF1889(<)
198214.SF0681PF01527
198214.SF0685PF01527
198214.SF0688+
198214.SF1249+
198214.SF1536PF03400
198214.SF1242PF03400
198214.CP0116PF01527
198214.SF1082+
198214.SF1080+
198214.SF0755(PF01609)
198214.SF0200+
198214.SF1337+
198214.SF1330+
198214.SF4301PF03400
198214.SF4126+
198214.SF4124+
198214.SF4237PF03400
198214.SF3012PF03400
198214.SF3010PF03400
198214.SF4050+
198214.SF4368PF03400
198214.SF3306PF03400
198214.SF3302PF03400
198214.SF2301+
198214.SF2305+
198214.SF2307PF01527
198214.SF1294+
198214.SF2870+
198214.SF2275(+)(ER)
198214.CP0111+not used
198214.SF2051PF01527
198214.SF2056+
198214.SF1439PF01527
198214.SF0921(PF01609)
198214.CP0179PF13276
198214.CP0171PF01527
198214.SF0327+
198214.SF0320PF01527
198214.SF0218(<)
198214.SF0212(+)PF00665
198214.SF0214PF01527
198214.SF1340PF01527
198214.SF1344(PF01695)
198214.SF3272+
198214.SF0694PF00665
198214.SF0696PF01527
198214.SF0693PF01527
198214.SF4337PF03400
198214.SF0106+
198214.SF4339(PF03738)
198214.SF4203PF03400
198214.SF4119PF03400
198214.SF2995+
198214.SF2999+
198214.SF3467(PF01609)
198214.SF3005(+)PF01527
198214.SF3003(PF01609)
198214.SF2209PF03400
198214.SF2203(PF01609)
198214.SF2034PF01527
198214.SF3264PF03400
198214.SF3266PF03400
198214.SF1648+
198214.SF1642PF03400
198214.SF1824+
198214.SF2192(+)PF03400
198214.SF2194PF03400
198214.SF1428PF01527
198214.SF0910(+)+
198214.CP0166(+)PF01527
198214.SF2422(PF01609)
198214.SF0437+
198214.SF1510PF03400
198214.SF0595PF03400
198214.SF0593+
198214.SF0592+
198214.SF2732+
198214.SF4020+
198214.SF2758(+)PF00665
198214.SF0773(PF01228)
198214.SF1351PF03400
198214.SF1356PF01527
198214.SF2895+
198214.SF3189+
198214.SF4214PF03400
198214.SF4217PF01527
198214.SF3670PF03400
198214.SF2983(PF01609)
198214.SF3450(PF01609)
198214.SF3109(PF01609)
198214.SF2853+
198214.SF2856(+)PF01527
198214.SF3078(PF03738)
198214.SF2211PF01527
198214.SF3299+
198214.SF1636(+)(<)
198214.SF2501PF03400
198214.SF3855+not used
198214.SF1608+
198214.SF2181PF01527
198214.SF2184PF03400
198214.SF1180+
198214.SF1744PF03400
198214.CP0112(PF03050)
198214.CP0115+
198214.SF3920(+)(plastid)
198214.SF0346(>)
198214.CP0029(PF01695)
198214.CP0028(PF01609)
198214.CP0025PF00665
198214.CP0020(PF03050)
198214.SF0904(PF01609)
198214.SF1367PF03400
198214.SF1166PF01527
198214.SF0661+
198214.SF0018PF03400
198214.SF3665(PF06176)
198214.SF3663+
198214.SF3442(PF05189)
198214.SF1228(<)
198214.SF3592PF03400
198214.SF3595(>)
198214.CP0086(PF03050)
198214.SF2221+
198214.SF1529+
198214.CP0125+
198214.SF3285+
198214.SF2084+
198214.SF2533+
198214.SF2534(+)(plastid)
198214.SF3846+
198214.SF1195+
198214.SF1196PF03400
198214.SF1198(PF01609)
198214.SF1756+
198214.SF1753PF03400
198214.SF1759PF03400
198214.CP0108PF01527
198214.SF0804(PF01609)
198214.SF0807+
198214.SF0374(PF03050)
198214.SF1288+
198214.SF0370+
198214.SF0571+
198214.CP0037(+)+
198214.SF0974+
198214.SF1379PF01527
198214.SF0713(<)
198214.SF1371PF01527
198214.SF1374PF00665
198214.SF1375+
198214.SF0482+
198214.SF0484(PF01609)
198214.SF1177+
198214.SF1175(<)
198214.SF3068(+)(mitochondrial)
198214.SF1554+
198214.SF0157+
198214.SF0155+
198214.SF0399(PF01609)
198214.CP0146+
198214.SF0025+
198214.SF0024+
198214.SF2772+
198214.SF3611+
198214.SF3435+
198214.SF3724PF03400
198214.SF3548PF03400
198214.SF2234+
198214.SF1762(<)
198214.CP0138+
198214.SF2416PF03400
198214.CP0130+
198214.SF3946PF03400
198214.SF1819PF03400
198214.SF0366PF03400
198214.SF1541PF03400
198214.SF2702+
198214.CP0003(<)
198214.CP0006(PF03050)
198214.SF1385PF03400
198214.SF0492PF01527
198214.SF0493PF01527
198214.SF4383+
198214.SF4392(PF01695)
198214.SF4397PF03400
198214.SF4398+
198214.SF0034+
198214.SF4244+
198214.SF3601PF03400
198214.SF3736PF03400
198214.SF3732(<)
198214.SF3558(<)
198214.SF3555+
198214.SF3550(PF01204)
198214.SF2950PF03400
198214.SF1050PF01527
198214.SF3136PF03400
198214.SF1606PF01527
198214.SF2397+
198214.SF1699(+)(plastid)
198214.SF2013PF03400
198214.SF2173PF03400
198214.CP0123+
198214.SF2176PF03400
198214.CP0127+
198214.SF1692(PF01609)
198214.SF2152PF03400
198214.SF0827+
198214.SF1551PF01527
198214.SF1804PF01527
198214.SF3936+
198214.SF0552+
198214.SF2773+
198214.CP0017(PF01609)
198214.CP0018PF01527
198214.CP0019(<)
198214.SF0950+
198214.SF0732+
198214.SF0731(<)
198214.SF1394+
198214.SF1157+
198214.SF2605+
198214.CP0242PF01527
198214.SF2965+
198214.SF4387+
198214.CP0227+
198214.SF0371+
198214.SF4259(PF01609)
198214.SF4251+
198214.SF1383+
198214.SF2948+
198214.SF3637PF03400
198214.CP0224+
198214.SF0880(+)(mitochondrial)
198214.SF4038(PF01609)
198214.SF3701PF00665
198214.SF3706PF01527
198214.SF3563(+)(plastid)
198214.SF3566PF03400
198214.SF3090(+)PF03400
198214.SF1942PF03400
198214.SF2547PF01527
198214.SF3892(PF01609)
198214.SF1709(PF01609)
198214.SF1704PF03400
198214.SF2166+
198214.SF3961PF03400
198214.SF1013(+)(ER)
198214.CP0066PF01527
198214.CP0069(PF01695)
198214.CP0068(PF03050)
198214.SF1499PF03400
198214.SF1492PF03400
198214.SF1496+
198214.SF2610+
198214.SF0833PF03400
198214.CP0255PF01527
198214.SF1239(PF01609)
198214.CP0250+
198214.CP0258+
198214.SF1600+
198214.SF4288PF03400
198214.SF4281(+)(ER)
198214.SF4284PF03400
198214.SF3791+
198214.SF3621PF03400
198214.SF3625PF03400
198214.SF1750+
198214.SF3712PF03400
198214.SF3574(PF03222)
198214.SF3577+
198214.SF3086PF03400
198214.SF2970(PF03050)
198214.SF2974PF00665
198214.SF2979PF01527
198214.SF3405+
198214.SF2577(>)
198214.SF3882PF03400
198214.SF3951+
198214.SF1719+
198214.SF2119PF03400
198214.SF3972PF03400
198214.SF0627+
198214.SF3703PF01527
198214.SF3154(PF01228)
198214.SF0536PF03400
198214.SF1001PF03400
198214.SF2756PF01527
198214.SF2026PF03400
198214.SF2023(PF01609)
198214.SF2750PF03400
198214.CP0077PF03400
198214.CP0078+
198214.SF0447PF03400
198214.SF2620PF01527
198214.SF0846+
198214.SF2423+
198214.SF0193(PF01609)
198214.SF0663PF01527
198214.CP0267PF01527
198214.CP0268PF01527
198214.SF0265+
198214.SF0262PF03400
198214.SF4291+
198214.SF4261+
198214.SF3363(+)(mitochondrial)
198214.SF3144+
198214.SF0309(>)
198214.SF3165+
198214.SF3219+
198214.SF3210(<)
198214.SF2362+
198214.SF3187+
198214.SF1724PF03400
198214.SF3989+
198214.SF3890+
198214.SF1921PF01527
198214.SF1926PF01527
198214.SF1032(PF01609)
198214.SF1037PF01527
198214.CP0045(PF01695)
198214.SF2035(PF03050)
198214.CP0041PF00665
198214.CP0040PF01527
198214.SF0291PF03400
198214.SF0292(>)
198214.SF0293(>)
198214.SF0296PF01527
198214.SF0457+
198214.SF0454(+)(<)
198214.SF2631(>)
198214.SF1258(+)
198214.SF0753(+)
198214.SF4197(+)
198214.SF3177(+)
198214.SF4265(+)
198214.SF3206(+)
198214.SF0810(+)
198214.SF2137(+)
198214.SF2136(+)
198214.SF0514(+)
198214.SF1557(+)
198214.SF0467(+)
198214.SF1442(+)
198214.SF0644(+)
198214.CP0209(+)
198214.SF4180(+)
198214.SF3746(+)
198214.SF1963(+)
198214.SF3539(+)
198214.SF2484(+)
198214.SF1698(+)
198214.SF2489(+)
198214.SF4364(+)
198214.SF1876(+)
198214.CP0217(+)
198214.SF1279(+)
198214.SF0253(+)
198214.SF1306(+)
198214.SF3049(+)
198214.SF4378(+)
198214.SF4404(+)
198214.SF4150(+)
198214.CP0049(+)
198214.SF2706(+)
198214.SF2337(+)
198214.SF2061(+)
198214.SF2800(+)
198214.SF3530(+)
198214.CP0133(+)
198214.SF3102(+)
198214.SF2988(+)
198214.SF1689(+)
198214.SF2859(+)
198214.SF0794(+)
198214.SF0813(+)
198214.SF0225(+)
198214.SF1544(+)
198214.SF4091(+)
198214.SF3033(+)
198214.SF3032(+)
198214.SF3782(+)
198214.SF3327(+)
198214.SF2325(+)
198214.SF1459(+)
198214.SF2499(+)
198214.SF2259(+)
198214.SF3818(+)
198214.SF3814(+)
198214.SF2678(+)
198214.SF0310(+)
198214.SF1256(+)
198214.SF1094(+)
198214.SF0234(+)
198214.SF1322(+)
198214.SF1324(+)
198214.SF2509(+)
198214.SF4420(+)
198214.SF2476(+)
198214.SF0143(+)
198214.CP0090(+)
198214.CP0265a(+)
198214.SF0930(+)
198214.SF1404(+)
198214.SF1796(+)
198214.SF2005(+)
198214.SF0689(+)
198214.SF1539(+)
198214.SF1530(+)
198214.SF0208(+)
198214.SF1336(+)
198214.SF2585(+)
198214.SF4233(+)
198214.SF4239(+)
198214.SF3497(+)
198214.SF1116(+)
198214.SF3871(+)
198214.SF0329(+)
198214.SF3796(+)
198214.SF1507(+)
198214.SF0710(+)
198214.SF0749(+)
198214.SF0430(+)
198214.SF0103(+)
198214.SF1711(+)
198214.SF3487(+)
198214.SF3310(+)
198214.SF4114(+)
198214.SF2844(+)
198214.SF2841(+)
198214.SF3002(+)
198214.SF0431(+)
198214.SF1436(+)not used
198214.SF3731(+)
198214.SF0928(+)
198214.SF0770(+)
198214.SF1355(+)
198214.SF4211(+)
198214.SF4105(+)
198214.SF2982(+)
198214.SF2986(+)
198214.SF2218(+)
198214.SF3298(+)
198214.SF1985(+)
198214.SF2430(+)
198214.SF1567(+)
198214.SF2727(+)
198214.SF0903(+)
198214.SF1364(+)
198214.SF1163(+)
198214.SF0546(+)
198214.CP0048(+)
198214.SF4002(+)
198214.SF4008(+)
198214.SF2150(+)
198214.SF2889(+)
198214.SF2223(+)
198214.SF3284(+)
198214.SF1528(+)
198214.SF1028(+)
198214.SF1757(+)
198214.CP0100(+)
198214.CP0109(+)
198214.SF3982(+)
198214.SF0972(+)
198214.SF0975(+)
198214.SF0977(+)
198214.SF4019(+)
198214.SF1787(+)
198214.SF1292(+)
198214.SF2083(+)
198214.SF2413(+)
198214.SF0361(+)
198214.SF0568(+)
198214.CP0001(+)
198214.SF0497(+)
198214.SF0381(+)
198214.SF4395(+)
198214.SF0039(+)
198214.SF3427(+)
198214.SF2958(+)
198214.SF1602(+)
198214.CP0128(+)
198214.SF2998(+)
198214.SF3937(+)
198214.SF2774(+)
198214.SF1397(+)
198214.SF3166(+)
198214.SF0607(+)
198214.SF0605(+)
198214.SF4388(+)
198214.SF1380+
198214.SF0809(+)
198214.SF3635(+)
198214.SF3639(+)
198214.SF2657(+)
198214.CP0032(+)
198214.SF3969(+)
198214.SF3960(+)
198214.SF4247(+)
198214.SF1011(+)
198214.SF2764(+)
198214.SF0877(+)not used
198214.SF2614(+)
198214.SF0836(+)
198214.SF0463(+)
198214.SF3790(+)
198214.SF3575(+)
198214.SF1714(+)
198214.SF1958(+)
198214.SF1007(+)
198214.SF1003(+)
198214.CP0076(+)
198214.SF2593(+)
198214.SF2317(+)
198214.SF0285(+)
198214.SF1034(+)
198214.SF2623(+)
198214.SF1525(+)
198214.CP0260(+)
198214.SF1226(+)
198214.SF0064(+)
198214.SF1601(+)
198214.SF3148(+)
198214.SF0984(+)
198214.SF3413(+)
198214.SF3184(+)
198214.SF3682(+)
198214.SF2748(+)
198214.SF2038(+)
198214.SF2632(+)
198214.SF2381(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================