Effective results for Porphyromonas gingivalis W83 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 43 proteins (2 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
242619.PG0522(PF01715)(mitochondrial)
242619.PG0954(PF13431)ER
242619.PG0593PF12812ER
242619.PG1864PF14580ER; (ER)
242619.PG1448(PF05598) (PF01609)
242619.PG1624(PF05598) (PF01609)
242619.PG1906(PF05598) (PF01609)
242619.PG0050(PF01609)(mitochondrial)
242619.PG0184(PF05598) (PF01609)
242619.PG0460(PF05598) (PF01609)
242619.PG0329(PF02971) (PF07837)
242619.PG1031(PF05598) (PF01609)
242619.PG1320(PF05598) (PF01609)
242619.PG1177(PF05598) (PF01609)
242619.PG0549(PF05598) (PF01609)
242619.PG0019(PF01609)(mitochondrial)
242619.PG0825(PF05598) (PF01609)
242619.PG0225(PF01609)(mitochondrial)
242619.PG0177(PF01609)(mitochondrial)
242619.PG0487(PF01609)(mitochondrial)
242619.PG1197(PF05598) (PF01609)
242619.PG0970(PF01609)(mitochondrial)
242619.PG2194(PF01609)(mitochondrial)
242619.PG1658(PF01609)(mitochondrial)
242619.PG1244(PF05598) (PF01609)
242619.PG1673(PF01609)(mitochondrial)
242619.PG1261(PF01609)(mitochondrial)
242619.PG1042(PF05693)
242619.PG0062(PF05970)
242619.PG1903(PF16314)
242619.PG1350(PF01609)
242619.PG0277(PF01609)
242619.PG1055(PF00648)
242619.PG0865(PF01609)
242619.PG0461(PF05598)
242619.PG2176(PF01609)
242619.PG0332(PF02178)
242619.PG0335(PF01715)
242619.PG1746(PF01609)
242619.PG1519(PF13910)
242619.PG2047(PF05970)
242619.PG1014(PF13431)
242619.PG1061(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================