Effective results for Pseudomonas savastanoi pv. phaseolicola 1448A (eggnog40)

Summary

Number of putative secreted proteins: 805
- Predicted by EffectiveT3: 240 (high confidence), 353 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 12 before, 42 behind expected region 25..70aa
- Predicted by T4SEpre: 124
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 124 proteins (95 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
264730.PSPPH_2947		(<)	+		ER
264730.PSPPH_3225		(>)	+		ER
264730.PSPPH_3475		+	+		ER
264730.PSPPH_3862		(>)			ER
264730.PSPPH_3916		(>)			(ER); ER
264730.PSPPH_0814			+		mitochondrial; (mitochondrial)
264730.PSPPH_4222	+				ER
264730.PSPPH_4300		(>)			(ER)
264730.PSPPH_1226			+		ER
264730.PSPPH_0775		+			ER
264730.PSPPH_0482			+		ER
264730.PSPPH_3589			+		ER
264730.PSPPH_0175				PF01609	(mitochondrial); mitochondrial
264730.PSPPH_3632		(>)			ER
264730.PSPPH_0269		+			(ER)
264730.PSPPH_2674	+				ER
264730.PSPPH_1565			+		ER
264730.PSPPH_4814			+		ER
264730.PSPPH_5062				PF00872	(mitochondrial)
264730.PSPPH_3629			+		mitochondrial
264730.PSPPH_2557		(>)			(mitochondrial); (ER)
264730.PSPPH_4825			+		ER
264730.PSPPH_4015			+		ER
264730.PSPPH_0446			+		ER
264730.PSPPH_3767			+		ER
264730.PSPPH_3766			+		ER
264730.PSPPH_3166			+		ER
264730.PSPPH_2650	+				(mitochondrial)
264730.PSPPH_4516		+			mitochondrial
264730.PSPPH_2280			+		ER; (ER)
264730.PSPPH_1029	(+)	+			(mitochondrial)
264730.PSPPH_0516				(PF06293)	ER; (ER)
264730.PSPPH_0729	+				(ER)
264730.PSPPH_2904	+				mitochondrial; (mitochondrial)
264730.PSPPH_1582			+		ER
264730.PSPPH_4213	+				ER; (ER)
264730.PSPPH_2958			+		ER; (ER)
264730.PSPPH_2939			+		ER
264730.PSPPH_1917		(>)			ER
264730.PSPPH_1823		(<)			ER
264730.PSPPH_4183	+				(mitochondrial); plastid
264730.PSPPH_3696		(>)			(mitochondrial)
264730.PSPPH_0313			+		ER
264730.PSPPH_4363			+		(mitochondrial); (plastid)
264730.PSPPH_1106			+		ER
264730.PSPPH_3760			+		mitochondrial
264730.PSPPH_0635		+			ER
264730.PSPPH_2260			+		mitochondrial; (mitochondrial)
264730.PSPPH_4095		(<)			ER
264730.PSPPH_5148			+		ER
264730.PSPPH_1451	+				(mitochondrial)
264730.PSPPH_2274			+		(ER)
264730.PSPPH_1890			+		ER
264730.PSPPH_4155		(>)			mitochondrial
264730.PSPPH_1546		+			ER
264730.PSPPH_3000	+				(mitochondrial); (plastid)
264730.PSPPH_0871			+		ER
264730.PSPPH_1466	+				ER; plastid
264730.PSPPH_5044			+		(mitochondrial)
264730.PSPPH_1109			+		ER
264730.PSPPH_4859	+				(ER)
264730.PSPPH_1257	+				(mitochondrial); (plastid)
264730.PSPPH_1256	+				(mitochondrial); plastid
264730.PSPPH_0343		(>)			(mitochondrial)
264730.PSPPH_0908			+		ER
264730.PSPPH_0902			+		ER; (ER)
264730.PSPPH_0907		(<)			ER
264730.PSPPH_0750			+		ER
264730.PSPPH_0117	+		+		plastid
264730.PSPPH_3881			+		ER
264730.PSPPH_0578		(>)			(ER); (mitochondrial)
264730.PSPPH_0804			+		(ER)
264730.PSPPH_2989		(>)			(ER)
264730.PSPPH_3125			+		ER
264730.PSPPH_2053		+			ER
264730.PSPPH_4904		(>)			ER
264730.PSPPH_2451			+		ER
264730.PSPPH_1296	+		+
264730.PSPPH_1327	+				(mitochondrial)
264730.PSPPH_3917	+		+
264730.PSPPH_2070	+				plastid
264730.PSPPH_2730				PF01609	(ER)
264730.PSPPH_1590	+				(plastid)
264730.PSPPH_2953	(+)				mitochondrial
264730.PSPPH_1600				PF01609	(ER)
264730.PSPPH_0776				PF01609	(ER)
264730.PSPPH_0176				PF01609	(ER)
264730.PSPPH_0003	(+)				(mitochondrial)
264730.PSPPH_4076	(+)				ER; (ER)
264730.PSPPH_4493	+		+
264730.PSPPH_3146	(+)	+			(mitochondrial)
264730.PSPPH_0769				PF01609	(ER)
264730.PSPPH_2677	(+)				mitochondrial; (mitochondrial)
264730.PSPPH_1709	+				(plastid)
264730.PSPPH_0169		(>)		PF01609
264730.PSPPH_2152	+				(ER)
264730.PSPPH_2715	+				(plastid)
264730.PSPPH_1372				PF01609	(ER)
264730.PSPPH_1611	(+)				ER; (ER)
264730.PSPPH_1717	(+)				mitochondrial; (mitochondrial)
264730.PSPPH_5011	+			(PF06945)
264730.PSPPH_3606	+				(mitochondrial)
264730.PSPPH_3163	(+)				ER
264730.PSPPH_1544	+	+
264730.PSPPH_1490				PF01609	(ER)
264730.PSPPH_2568				PF01609	(ER)
264730.PSPPH_1920	(+)				(mitochondrial)
264730.PSPPH_4736	+				(plastid)
264730.PSPPH_3425	+				plastid
264730.PSPPH_4285				PF01609	(ER)
264730.PSPPH_3884				PF01609	(ER)
264730.PSPPH_3375	+				plastid
264730.PSPPH_2287		(>)		PF01609
264730.PSPPH_4129	(+)				(mitochondrial); (plastid)
264730.PSPPH_2352	+			(PF05932)
264730.PSPPH_1735				PF01609	(ER)
264730.PSPPH_0606				PF01609	(ER)
264730.PSPPH_3747				PF01609	(ER)
264730.PSPPH_0506	(+)				ER
264730.PSPPH_3407	+				plastid
264730.PSPPH_4957			+		(mitochondrial)
264730.PSPPH_1288	+				plastid
264730.PSPPH_2115	+				(mitochondrial)
264730.PSPPH_2116	(+)				mitochondrial
264730.PSPPH_4990		(>)		PF01609
264730.PSPPH_4995	+				(mitochondrial)
264730.PSPPH_4976	+				plastid
264730.PSPPH_1602				PF01609	(mitochondrial)
264730.PSPPH_4366	(+)				(mitochondrial); (plastid)
264730.PSPPH_3329		(>)		PF01609
264730.PSPPH_0170				PF01609	(ER)
264730.PSPPH_0179		+	+
264730.PSPPH_2742	(+)				ER
264730.PSPPH_2326		+			(mitochondrial)
264730.PSPPH_2819			+	PF14432
264730.PSPPH_2814		(>)		PF01609
264730.PSPPH_2815				PF01609	(ER)
264730.PSPPH_1675	(+)				ER
264730.PSPPH_0899				PF01609	(ER)
264730.PSPPH_3028	+				plastid
264730.PSPPH_2006				PF01609	(ER)
264730.PSPPH_2484				PF01609	(ER)
264730.PSPPH_2313	(+)			(PF03538)	(plastid)
264730.PSPPH_2869	+				(plastid)
264730.PSPPH_2865	(+)				(mitochondrial); plastid
264730.PSPPH_4091	+		+
264730.PSPPH_4168		(<)	+
264730.PSPPH_4763	(+)				ER
264730.PSPPH_4786	(+)				(ER)
264730.PSPPH_2123	+	+
264730.PSPPH_2308				PF01609	(ER)
264730.PSPPH_2659				PF01609	(ER)
264730.PSPPH_1782	(+)				(ER); ER
264730.PSPPH_1273	+				(plastid)
264730.PSPPH_1878				PF01609	(ER)
264730.PSPPH_0784	+				plastid
264730.PSPPH_1891	(+)				(mitochondrial); (plastid)
264730.PSPPH_4159				PF01609	(ER)
264730.PSPPH_0320	+				plastid
264730.PSPPH_1494	(+)				(ER); ER
264730.PSPPH_1462			+		(ER)
264730.PSPPH_2206			+		plastid
264730.PSPPH_1268	+				(plastid)
264730.PSPPH_4275				PF01609	(ER)
264730.PSPPH_1865		(>)			(ER)
264730.PSPPH_0917				PF01609	(ER)
264730.PSPPH_3492				PF00872	(ER)
264730.PSPPH_3498	+				(plastid)
264730.PSPPH_3350	+				plastid
264730.PSPPH_0868	+				(ER)
264730.PSPPH_2002	+				(plastid)
264730.PSPPH_0767	+				(mitochondrial)
264730.PSPPH_3052	(+)				(mitochondrial); (plastid)
264730.PSPPH_4689	+			PF00872
264730.PSPPH_4685				PF01609	(ER)
264730.PSPPH_1328	(+)				(mitochondrial)
264730.PSPPH_2531				PF01609	(ER)
264730.PSPPH_0114		(>)		PF01609
264730.PSPPH_0113				PF01609	(ER)
264730.PSPPH_3581		(>)		PF01609
264730.PSPPH_3582				PF01609	(ER)
264730.PSPPH_0240	(+)				(ER); plastid
264730.PSPPH_3728	(+)				mitochondrial; (mitochondrial)
264730.PSPPH_5187	+				(mitochondrial)
264730.PSPPH_1090	+		+
264730.PSPPH_1430	+				(plastid)
264730.PSPPH_4879				(PF00585)
264730.PSPPH_4870			+
264730.PSPPH_1505	(+)			PF00872
264730.PSPPH_0588		(>)
264730.PSPPH_0582	+
264730.PSPPH_1295	+
264730.PSPPH_2525	+
264730.PSPPH_0748	(+)			PF00872
264730.PSPPH_0215			+
264730.PSPPH_0212	+
264730.PSPPH_0017	+
264730.PSPPH_3597		(<)
264730.PSPPH_4648				(PF05277)
264730.PSPPH_3919			+
264730.PSPPH_4247	+
264730.PSPPH_3910		(<)
264730.PSPPH_0816	+
264730.PSPPH_3608	(+)				(plastid)
264730.PSPPH_4481			+
264730.PSPPH_4483	+				not used
264730.PSPPH_3138	+
264730.PSPPH_3738	+
264730.PSPPH_3048	+
264730.PSPPH_0949	+
264730.PSPPH_0387	(+)				plastid
264730.PSPPH_0331	+
264730.PSPPH_1429	+
264730.PSPPH_1424	+
264730.PSPPH_1422			+
264730.PSPPH_0808	+
264730.PSPPH_2427			+
264730.PSPPH_2423	+
264730.PSPPH_2429	(+)				(ER)
264730.PSPPH_1519		(>)
264730.PSPPH_2087				PF00872
264730.PSPPH_2732	+
264730.PSPPH_4805	+
264730.PSPPH_4806			+
264730.PSPPH_2954				(PF06945)
264730.PSPPH_2889	+
264730.PSPPH_0741	+
264730.PSPPH_1770		+
264730.PSPPH_1771	+
264730.PSPPH_1992	(+)			PF00872
264730.PSPPH_1977	(+)				(mitochondrial)
264730.PSPPH_4072	(+)			(PF06293)
264730.PSPPH_3459	+
264730.PSPPH_3921	+
264730.PSPPH_3920	+
264730.PSPPH_0822	(+)			PF00872
264730.PSPPH_1558	+
264730.PSPPH_4492	(+)			PF00872
264730.PSPPH_3636	+
264730.PSPPH_0102	+
264730.PSPPH_1960	+
264730.PSPPH_2541	(+)			PF00872
264730.PSPPH_2897			+
264730.PSPPH_1365	(+)			PF00872
264730.PSPPH_1385	+
264730.PSPPH_1708	(+)				(plastid)
264730.PSPPH_0161	(+)			PF00872
264730.PSPPH_5065	(+)				(mitochondrial)
264730.PSPPH_4004			+
264730.PSPPH_0381			+
264730.PSPPH_4626		(>)
264730.PSPPH_3441	(+)			PF00872
264730.PSPPH_0839	+
264730.PSPPH_0837	+
264730.PSPPH_1113	(+)				(ER)
264730.PSPPH_2350	+
264730.PSPPH_0740		(>)
264730.PSPPH_1251	(+)				(mitochondrial)
264730.PSPPH_3482	+
264730.PSPPH_2393	+
264730.PSPPH_2396				(PF00182)
264730.PSPPH_2394	+
264730.PSPPH_2156	(+)			PF00872
264730.PSPPH_2717	(+)	(>)
264730.PSPPH_2979	(+)			PF00872
264730.PSPPH_1175	(+)				(mitochondrial)
264730.PSPPH_2571	(+)	(>)
264730.PSPPH_2577	+
264730.PSPPH_1371	(+)	(>)
264730.PSPPH_4878				(PF00585)
264730.PSPPH_0153	+
264730.PSPPH_1950	+
264730.PSPPH_1632			+
264730.PSPPH_0539	+
264730.PSPPH_1005	+
264730.PSPPH_4639			+
264730.PSPPH_0843	+
264730.PSPPH_3389	+
264730.PSPPH_3386	+
264730.PSPPH_5169	+
264730.PSPPH_3361			+
264730.PSPPH_4484	+
264730.PSPPH_5164	+
264730.PSPPH_2412	(+)	(>)
264730.PSPPH_4836	(+)			PF00872
264730.PSPPH_2780	+
264730.PSPPH_0602	+
264730.PSPPH_5033			+
264730.PSPPH_0515				(PF06293)
264730.PSPPH_2268	+
264730.PSPPH_2366	+
264730.PSPPH_1146				PF01166
264730.PSPPH_2563	(+)				plastid
264730.PSPPH_1818	+
264730.PSPPH_1815	+
264730.PSPPH_3807	+
264730.PSPPH_1723	+
264730.PSPPH_5006	+
264730.PSPPH_1470		+
264730.PSPPH_4025			+
264730.PSPPH_4735	(+)			PF00872
264730.PSPPH_3557				(PF06945)
264730.PSPPH_3554	+
264730.PSPPH_3398			+
264730.PSPPH_3396	+
264730.PSPPH_3397	+
264730.PSPPH_3392	(+)				plastid
264730.PSPPH_3770	(+)	(>)
264730.PSPPH_3081	+
264730.PSPPH_3089		(>)
264730.PSPPH_2170	(+)			PF00872
264730.PSPPH_2289	(+)			PF01609
264730.PSPPH_1154				(PF00646)
264730.PSPPH_0607	+
264730.PSPPH_0604	+
264730.PSPPH_1938	(+)		+
264730.PSPPH_0284		+
264730.PSPPH_0513				(PF06293)
264730.PSPPH_0046	(+)			PF00872
264730.PSPPH_0514				(PF06293)
264730.PSPPH_0049	(+)			PF00872
264730.PSPPH_0462	+
264730.PSPPH_3413		(>)
264730.PSPPH_3410	(+)				(ER)
264730.PSPPH_3415	+
264730.PSPPH_5061	+
264730.PSPPH_1874	+
264730.PSPPH_4343	+
264730.PSPPH_3344	(+)		+
264730.PSPPH_3341				PF03762
264730.PSPPH_3983	+
264730.PSPPH_3986	(+)			(PF10014)
264730.PSPPH_4874			+
264730.PSPPH_5102	+
264730.PSPPH_2168	+
264730.PSPPH_2508	+
264730.PSPPH_2762		+
264730.PSPPH_2769	(+)				(ER)
264730.PSPPH_0723	+
264730.PSPPH_1599		(>)
264730.PSPPH_0535	+
264730.PSPPH_2584	+
264730.PSPPH_0617	(+)			PF00872
264730.PSPPH_0207			+
264730.PSPPH_2086				(PF00182)
264730.PSPPH_0180			+
264730.PSPPH_0184	+
264730.PSPPH_1059		(<)
264730.PSPPH_0500	+
264730.PSPPH_2325	+
264730.PSPPH_3977	(+)			PF00872
264730.PSPPH_4754	+
264730.PSPPH_3406	+
264730.PSPPH_3402			+
264730.PSPPH_1454	(+)				(plastid)
264730.PSPPH_3573	(+)				(mitochondrial)
264730.PSPPH_3579	(+)			PF00872
264730.PSPPH_3184	+
264730.PSPPH_3354	+
264730.PSPPH_3995	+
264730.PSPPH_3759		(>)
264730.PSPPH_5124	+
264730.PSPPH_3197	+
264730.PSPPH_3195		(>)
264730.PSPPH_0324	+
264730.PSPPH_4994	+
264730.PSPPH_3828		(>)
264730.PSPPH_2029	+
264730.PSPPH_1902	(+)			PF00872
264730.PSPPH_2754	(+)				(mitochondrial)
264730.PSPPH_2884	+
264730.PSPPH_0920	+
264730.PSPPH_2552	+
264730.PSPPH_4972	+
264730.PSPPH_1352	+
264730.PSPPH_0665				(PF00182)
264730.PSPPH_0778			+
264730.PSPPH_2803		(<)
264730.PSPPH_2802			+
264730.PSPPH_2809			+
264730.PSPPH_2243	+
264730.PSPPH_1222		(<)
264730.PSPPH_1597	(+)			PF00872
264730.PSPPH_1912	(+)				(mitochondrial)
264730.PSPPH_1822	+
264730.PSPPH_2646	+
264730.PSPPH_1048	(+)	(>)
264730.PSPPH_0067	+
264730.PSPPH_0065			+
264730.PSPPH_2844	+				not used
264730.PSPPH_1757	+
264730.PSPPH_0087	(+)				(plastid)
264730.PSPPH_0409			+
264730.PSPPH_4744	+
264730.PSPPH_3697	(+)				(plastid)
264730.PSPPH_4565	+
264730.PSPPH_4368			+
264730.PSPPH_4362	(+)			PF00872
264730.PSPPH_4365	(+)			PF00872
264730.PSPPH_3328	+
264730.PSPPH_3217		(>)
264730.PSPPH_5048	+
264730.PSPPH_0460		+
264730.PSPPH_0171	+
264730.PSPPH_2108	+
264730.PSPPH_2192	+
264730.PSPPH_1691	+
264730.PSPPH_0672		(<)
264730.PSPPH_4965			+
264730.PSPPH_1217	+				not used
264730.PSPPH_1216	+
264730.PSPPH_5225	+
264730.PSPPH_5071		+
264730.PSPPH_1678	+
264730.PSPPH_4087	(+)			PF00872
264730.PSPPH_5179	+
264730.PSPPH_0303	+
264730.PSPPH_1347				(PF06945)
264730.PSPPH_0305	+
264730.PSPPH_3337	+
264730.PSPPH_3333	+
264730.PSPPH_3330	(+)			PF00872
264730.PSPPH_4428				(PF07678)
264730.PSPPH_4556				(PF10014)
264730.PSPPH_4227	(+)			PF00872
264730.PSPPH_2225	(+)				(ER)
264730.PSPPH_3024	(+)				(plastid)
264730.PSPPH_2228	+
264730.PSPPH_1535	+
264730.PSPPH_1116	(+)		+
264730.PSPPH_0311	+
264730.PSPPH_4885	+
264730.PSPPH_2799	(+)			PF00872
264730.PSPPH_2481			+
264730.PSPPH_2312	(+)			PF00872
264730.PSPPH_4951	+
264730.PSPPH_1442	(+)			PF00872
264730.PSPPH_1134	+
264730.PSPPH_5217	(+)				(ER)
264730.PSPPH_1669				(PF00585)
264730.PSPPH_1064	(+)			PF00872
264730.PSPPH_1536	(+)				(plastid)
264730.PSPPH_4160			+
264730.PSPPH_4764	+
264730.PSPPH_4789	(+)				(mitochondrial)
264730.PSPPH_0333	+
264730.PSPPH_0339	(+)			PF00872
264730.PSPPH_4301	+
264730.PSPPH_3839			+
264730.PSPPH_4221	+
264730.PSPPH_4967			+
264730.PSPPH_4439	+
264730.PSPPH_3234	(+)			PF00872
264730.PSPPH_2411	+
264730.PSPPH_3012	+
264730.PSPPH_2121		+
264730.PSPPH_4334	+
264730.PSPPH_2014	(+)			PF00872
264730.PSPPH_2015	+
264730.PSPPH_4896	+
264730.PSPPH_4893			+
264730.PSPPH_2788			+
264730.PSPPH_4298			+
264730.PSPPH_2782	(+)			PF00872
264730.PSPPH_2653	+
264730.PSPPH_0655	+
264730.PSPPH_2270		(>)
264730.PSPPH_1272			+
264730.PSPPH_5202	(+)			PF00872
264730.PSPPH_2662	(+)				(ER)
264730.PSPPH_4937	+
264730.PSPPH_1309		(>)
264730.PSPPH_0786				PF01609
264730.PSPPH_0250	+
264730.PSPPH_1091			+
264730.PSPPH_1093	+
264730.PSPPH_1097	+
264730.PSPPH_1893	(+)			(PF00182)
264730.PSPPH_1892	(+)		+
264730.PSPPH_4157	(+)			PF00872
264730.PSPPH_4153		(>)
264730.PSPPH_5119	+
264730.PSPPH_0321	+
264730.PSPPH_3539				(PF06945)
264730.PSPPH_4335	(+)			PF00872
264730.PSPPH_3534	+
264730.PSPPH_0927	+
264730.PSPPH_4448	+
264730.PSPPH_4446	+
264730.PSPPH_4757	(+)			PF00872
264730.PSPPH_3915	+				not used
264730.PSPPH_2652	+
264730.PSPPH_3005	+
264730.PSPPH_3640	(+)			PF00872
264730.PSPPH_3648			+
264730.PSPPH_1492	+
264730.PSPPH_1212	+
264730.PSPPH_2466	+
264730.PSPPH_4933	(+)			PF00872
264730.PSPPH_1267				(PF05932)
264730.PSPPH_1265	(+)			(PF05932)
264730.PSPPH_4845	(+)				plastid
264730.PSPPH_4848	+
264730.PSPPH_5091	+
264730.PSPPH_2843			+
264730.PSPPH_2515	+
264730.PSPPH_2516	+				not used
264730.PSPPH_0224	+
264730.PSPPH_0220	+
264730.PSPPH_1882	(+)			(PF00182)
264730.PSPPH_1881			+
264730.PSPPH_1887	(+)			PF00872
264730.PSPPH_1721	+
264730.PSPPH_0353	(+)				(mitochondrial)
264730.PSPPH_4326	+
264730.PSPPH_0627			+
264730.PSPPH_0140	+
264730.PSPPH_3499				(PF05932)
264730.PSPPH_1219	+
264730.PSPPH_2074	+
264730.PSPPH_0534	(+)				(plastid)
264730.PSPPH_0526	+
264730.PSPPH_2692		+
264730.PSPPH_4858		+
264730.PSPPH_1255	+
264730.PSPPH_0238	+
264730.PSPPH_1741				(PF10013)	not used
264730.PSPPH_0699	(+)			PF00872
264730.PSPPH_1744	(+)				(ER)
264730.PSPPH_4048	+
264730.PSPPH_0349	+
264730.PSPPH_0344	+
264730.PSPPH_4046	(+)			PF00872
264730.PSPPH_3484	+
264730.PSPPH_4598			+
264730.PSPPH_4267	(+)			PF00872
264730.PSPPH_3245	+
264730.PSPPH_5131			+
264730.PSPPH_1522	+
264730.PSPPH_4328			+
264730.PSPPH_5049	+
264730.PSPPH_2441	(+)			PF00872
264730.PSPPH_2223	+
264730.PSPPH_2222	+
264730.PSPPH_1246	+
264730.PSPPH_1242	+
264730.PSPPH_4459		(>)
264730.PSPPH_1623	+
264730.PSPPH_1332	(+)		+
264730.PSPPH_1336	(+)			PF00872
264730.PSPPH_3888		+
264730.PSPPH_0012	+
264730.PSPPH_4357			+
264730.PSPPH_0119	(+)			PF00872
264730.PSPPH_4554	+
264730.PSPPH_5180	+
264730.PSPPH_3871	+
264730.PSPPH_4435	+
264730.PSPPH_0574			+
264730.PSPPH_0377	+
264730.PSPPH_0375			+
264730.PSPPH_0978	+
264730.PSPPH_0975	+
264730.PSPPH_0974	+
264730.PSPPH_4676	(+)				(mitochondrial)
264730.PSPPH_4270	(+)			PF00872
264730.PSPPH_3273	(+)				(plastid)
264730.PSPPH_0801			+
264730.PSPPH_0803		+
264730.PSPPH_1061		(<)
264730.PSPPH_0276	+
264730.PSPPH_2056	+
264730.PSPPH_2050			+
264730.PSPPH_3848	(+)				(plastid)
264730.PSPPH_4390	(+)		+
264730.PSPPH_4900	+
264730.PSPPH_2750	+
264730.PSPPH_2450	(+)			PF00872
264730.PSPPH_0580	(+)
264730.PSPPH_1614	(+)
264730.PSPPH_1988	(+)
264730.PSPPH_1984	(+)
264730.PSPPH_3866	(+)				not used
264730.PSPPH_3861	(+)
264730.PSPPH_0360	(+)
264730.PSPPH_4646	(+)
264730.PSPPH_4643	(+)
264730.PSPPH_3594	(+)
264730.PSPPH_2987	(+)
264730.PSPPH_4238	(+)
264730.PSPPH_0338	(+)
264730.PSPPH_2738	(+)
264730.PSPPH_4105	(+)
264730.PSPPH_1971	(+)
264730.PSPPH_5170	(+)
264730.PSPPH_4181	(+)
264730.PSPPH_3925	(+)
264730.PSPPH_0263	(+)
264730.PSPPH_0267	(+)
264730.PSPPH_5022	(+)
264730.PSPPH_1566	(+)
264730.PSPPH_0567	(+)
264730.PSPPH_2721	(+)
264730.PSPPH_0494	(+)
264730.PSPPH_1647	(+)
264730.PSPPH_0498	(+)
264730.PSPPH_3840	(+)
264730.PSPPH_0946	(+)
264730.PSPPH_4622	(+)
264730.PSPPH_4716	(+)
264730.PSPPH_3443	(+)
264730.PSPPH_3716	(+)
264730.PSPPH_3483	(+)
264730.PSPPH_2402	(+)
264730.PSPPH_1579	(+)
264730.PSPPH_1942	(+)
264730.PSPPH_2713	(+)
264730.PSPPH_1394	(+)
264730.PSPPH_3913	(+)
264730.PSPPH_0156	(+)
264730.PSPPH_0154	(+)
264730.PSPPH_4384	(+)
264730.PSPPH_4380	(+)
264730.PSPPH_3946	(+)
264730.PSPPH_3431	(+)
264730.PSPPH_4525	(+)
264730.PSPPH_3381	(+)
264730.PSPPH_4823	(+)
264730.PSPPH_2707	(+)
264730.PSPPH_2566	(+)
264730.PSPPH_1812	(+)
264730.PSPPH_1725	(+)
264730.PSPPH_0636	(+)
264730.PSPPH_4027	(+)
264730.PSPPH_4026	(+)
264730.PSPPH_4730	(+)
264730.PSPPH_4515	(+)
264730.PSPPH_4040	(+)
264730.PSPPH_3394	(+)
264730.PSPPH_2307	(+)
264730.PSPPH_1172	(+)
264730.PSPPH_1276	(+)
264730.PSPPH_2913	(+)
264730.PSPPH_2599	(+)
264730.PSPPH_1157	(+)
264730.PSPPH_2595	(+)
264730.PSPPH_2090	(+)
264730.PSPPH_0600	(+)
264730.PSPPH_0199	(+)
264730.PSPPH_0465	(+)
264730.PSPPH_3417	(+)
264730.PSPPH_4342	(+)
264730.PSPPH_5064	(+)
264730.PSPPH_2160	(+)
264730.PSPPH_2161	+
264730.PSPPH_2164	(+)
264730.PSPPH_4460	(+)
264730.PSPPH_2747	(+)
264730.PSPPH_2297	(+)
264730.PSPPH_2909	(+)
264730.PSPPH_5019	(+)
264730.PSPPH_2585	(+)
264730.PSPPH_0612	(+)
264730.PSPPH_0616	(+)				not used
264730.PSPPH_5151	(+)
264730.PSPPH_1901	(+)
264730.PSPPH_2737	(+)
264730.PSPPH_0876	(+)
264730.PSPPH_4403	(+)				not used
264730.PSPPH_3755	(+)
264730.PSPPH_4708	(+)
264730.PSPPH_2997	(+)
264730.PSPPH_5126	(+)
264730.PSPPH_3823	(+)
264730.PSPPH_1190	(+)
264730.PSPPH_2751	(+)
264730.PSPPH_2626	(+)
264730.PSPPH_1353	(+)
264730.PSPPH_2241	(+)
264730.PSPPH_1738	(+)
264730.PSPPH_1916	(+)
264730.PSPPH_1913	(+)
264730.PSPPH_3899	(+)
264730.PSPPH_4567	(+)
264730.PSPPH_0651	(+)
264730.PSPPH_3324	(+)
264730.PSPPH_3219	(+)
264730.PSPPH_1774	(+)
264730.PSPPH_5112	(+)
264730.PSPPH_1431	(+)
264730.PSPPH_5213	(+)
264730.PSPPH_1074	(+)
264730.PSPPH_4986	(+)
264730.PSPPH_1078	(+)
264730.PSPPH_2448	(+)
264730.PSPPH_0698	(+)
264730.PSPPH_1769	(+)
264730.PSPPH_2038	(+)
264730.PSPPH_3788	(+)
264730.PSPPH_3315	(+)
264730.PSPPH_1693	(+)
264730.PSPPH_3316	(+)
264730.PSPPH_3317	(+)
264730.PSPPH_2630	(+)
264730.PSPPH_3764	(+)
264730.PSPPH_2255	(+)
264730.PSPPH_4175	(+)
264730.PSPPH_0097	(+)
264730.PSPPH_0412	(+)
264730.PSPPH_0410	(+)
264730.PSPPH_4313	(+)
264730.PSPPH_4312	(+)
264730.PSPPH_3514	(+)
264730.PSPPH_3518	(+)
264730.PSPPH_4468	(+)
264730.PSPPH_4319	(+)
264730.PSPPH_4220	(+)
264730.PSPPH_1680	(+)
264730.PSPPH_2795	(+)
264730.PSPPH_4252	(+)
264730.PSPPH_0542	(+)
264730.PSPPH_4164	(+)
264730.PSPPH_4788	(+)
264730.PSPPH_0336	(+)
264730.PSPPH_4303	(+)
264730.PSPPH_2410	(+)
264730.PSPPH_3681	(+)
264730.PSPPH_3201	(+)
264730.PSPPH_4258	(+)
264730.PSPPH_2126	(+)
264730.PSPPH_2127	(+)
264730.PSPPH_3850	(+)
264730.PSPPH_1052	(+)
264730.PSPPH_2787	(+)
264730.PSPPH_2496	(+)
264730.PSPPH_1789	(+)
264730.PSPPH_2279	(+)
264730.PSPPH_2275	(+)
264730.PSPPH_1274	(+)
264730.PSPPH_3851	(+)
264730.PSPPH_1453	(+)
264730.PSPPH_1092	(+)
264730.PSPPH_0432	(+)
264730.PSPPH_0439	(+)
264730.PSPPH_3898	(+)
264730.PSPPH_3535	(+)
264730.PSPPH_3797	(+)
264730.PSPPH_4695	(+)
264730.PSPPH_0032	(+)
264730.PSPPH_2065	(+)
264730.PSPPH_2687	(+)
264730.PSPPH_1148	(+)
264730.PSPPH_1264	(+)
264730.PSPPH_0221	(+)
264730.PSPPH_0133	(+)
264730.PSPPH_4146	(+)
264730.PSPPH_3815	(+)
264730.PSPPH_3491	(+)
264730.PSPPH_1443	(+)
264730.PSPPH_3674	(+)
264730.PSPPH_2078	(+)
264730.PSPPH_4276	(+)
264730.PSPPH_1418	(+)
264730.PSPPH_4924	(+)
264730.PSPPH_1225	(+)
264730.PSPPH_2215	(+)
264730.PSPPH_0039	(+)
264730.PSPPH_1349	(+)
264730.PSPPH_2097	(+)
264730.PSPPH_1742	(+)
264730.PSPPH_0694	(+)
264730.PSPPH_1119	(+)
264730.PSPPH_3486	(+)
264730.PSPPH_3064	(+)
264730.PSPPH_3113	(+)
264730.PSPPH_0241	(+)
264730.PSPPH_2048	(+)
264730.PSPPH_3236	(+)
264730.PSPPH_1164	(+)
264730.PSPPH_4975	(+)
264730.PSPPH_2540	(+)
264730.PSPPH_4053	(+)
264730.PSPPH_4860	(+)
264730.PSPPH_1244	(+)
264730.PSPPH_0596	(+)
264730.PSPPH_1213	(+)
264730.PSPPH_0543	(+)
264730.PSPPH_2533	(+)				not used
264730.PSPPH_2859	(+)
264730.PSPPH_1335	(+)
264730.PSPPH_0756	(+)
264730.PSPPH_3267	(+)
264730.PSPPH_4212	(+)
264730.PSPPH_5052	(+)
264730.PSPPH_3585	(+)
264730.PSPPH_3479	(+)
264730.PSPPH_3473	(+)
264730.PSPPH_3472	(+)
264730.PSPPH_3905	(+)
264730.PSPPH_4472	(+)
264730.PSPPH_3610	(+)
264730.PSPPH_0202	(+)
264730.PSPPH_4462	(+)
264730.PSPPH_2186	(+)
264730.PSPPH_4913	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 2.1 (21/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================