Effective results for Rubrobacter xylanophilus DSM 9941 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 55 proteins (1 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
266117.Rxyl_0520(PF13551)(mitochondrial)
266117.Rxyl_1936(PF13469)(ER)
266117.Rxyl_1241(PF11028)(ER)
266117.Rxyl_2683(PF13469)(ER); (mitochondrial)
266117.Rxyl_3105(PF13469)mitochondrial
266117.Rxyl_3104(PF13469)mitochondrial
266117.Rxyl_2987(PF09861)mitochondrial
266117.Rxyl_2361(PF12483)ER
266117.Rxyl_0935(PF11028)(ER); ER
266117.Rxyl_0562(PF13469)(ER)
266117.Rxyl_3067(PF13551)(mitochondrial)
266117.Rxyl_0352(PF04199)(plastid)
266117.Rxyl_1258(PF13551)(mitochondrial)
266117.Rxyl_0932(PF11028)(ER)
266117.Rxyl_0367(PF04199)
266117.Rxyl_0766(PF01268)
266117.Rxyl_0165(PF01592)
266117.Rxyl_0181(PF04893)
266117.Rxyl_1568(PF01268)
266117.Rxyl_1567(PF04961)
266117.Rxyl_1566(PF02882)
266117.Rxyl_2859(PF04893)
266117.Rxyl_1919(PF13551)
266117.Rxyl_1354(PF01592)
266117.Rxyl_2998(PF09861)
266117.Rxyl_1120(PF05706)
266117.Rxyl_2693(PF13469)
266117.Rxyl_2272(PF04199)
266117.Rxyl_3097(PF13469)
266117.Rxyl_0688(PF07994)
266117.Rxyl_1933(PF13469)
266117.Rxyl_0827(PF02882)
266117.Rxyl_0788(PF00643)
266117.Rxyl_1785PF00627
266117.Rxyl_2107(PF09861)
266117.Rxyl_2245(PF04199)
266117.Rxyl_1870(PF04199)
266117.Rxyl_3108(PF13469)
266117.Rxyl_2407(PF04199)
266117.Rxyl_0486(PF14791)
266117.Rxyl_2646(PF04199)
266117.Rxyl_2519(PF01268)
266117.Rxyl_2518(PF04961)
266117.Rxyl_2517(PF02882)
266117.Rxyl_0230(PF14791)
266117.Rxyl_1213(PF07994)
266117.Rxyl_1434(PF10571)
266117.Rxyl_2194(PF01592)
266117.Rxyl_0722(PF13469)
266117.Rxyl_2761(PF04893)
266117.Rxyl_2112(PF03015)
266117.Rxyl_1946(PF13469)
266117.Rxyl_1769(PF03243)
266117.Rxyl_1768(PF03243)
266117.Rxyl_0977(PF01592)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================