Effective results for Sinorhizobium meliloti 1021 (eggnog40)

Summary

Number of putative secreted proteins: 314
- Predicted by EffectiveT3: 87 (high confidence), 128 (low confidence)
- Predicted by EffectiveCCBD: 11 within, 10 before, 22 behind expected region 25..70aa
- Predicted by T4SEpre: 63
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 12 proteins (0 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
266834.SMc00456+ER
266834.SMc03234+ER
266834.SMc02897+ER
266834.SMc02543+ER
266834.SMc03971+(ER)
266834.SMc00540+(PF04305)(plastid)
266834.SMc01556+mitochondrial; (mitochondrial)
266834.SMc03049+(mitochondrial)
266834.SMc04226(PF07648)ER
266834.SMc04020+ER
266834.SMc01825(>)ER
266834.SMc01827+ER
266834.SMc04091+ER
266834.SMc00354+ER
266834.SMc00868+ER
266834.SMc00523(PF04305)(mitochondrial)
266834.SMc01722+(ER); ER
266834.SMc00655+(mitochondrial)
266834.SMc01652+ER
266834.SMc02359(>)ER
266834.SMc00612+ER; (ER)
266834.SMc03037+mitochondrial; plastid
266834.SMc03182(>)ER
266834.SMc01660+ER
266834.SMc00621+ER
266834.SMc04459+ER
266834.SMc02419+plastid
266834.SMc02088(<)(mitochondrial)
266834.SMc02792(>)(mitochondrial)
266834.SMc03789+plastid
266834.SMc02236+(plastid)
266834.SMc04219++
266834.SMc00570(+)(mitochondrial)
266834.SMc03048+plastid
266834.SMc05011+(mitochondrial); not used
266834.SMc00290+(mitochondrial)
266834.SMc03880+(mitochondrial)
266834.SMc03085++
266834.SMc02599(>)(ER)
266834.SMc00002+(ER)
266834.SMc02472+(plastid)
266834.SMc00775(+)(ER)
266834.SMc02240+(plastid)
266834.SMc00231(<)
266834.SMc01931+(plastid)
266834.SMc02020(+)(mitochondrial)
266834.SMc04240(+)ER; (ER)
266834.SMc03926+(plastid)
266834.SMc02727+(plastid)
266834.SMc00350(+)ER; (ER)
266834.SMc01711+plastid
266834.SMc03882(<)(mitochondrial)
266834.SMc00821(+)(mitochondrial)
266834.SMc02975+(mitochondrial)
266834.SMc02574+
266834.SMc01874+
266834.SMc01871+
266834.SMc00453+
266834.SMc04137+
266834.SMc04261+
266834.SMc02180+
266834.SMc02564+
266834.SMc04361+
266834.SMc01869+
266834.SMc04301+
266834.SMc00155+
266834.SMc02081+
266834.SMc02798(>)
266834.SMc02421(>)
266834.SMc02423(<)
266834.SMc02326(>)
266834.SMc04463(+)+
266834.SMc00038+
266834.SMc04202+
266834.SMc01144+
266834.SMc00329(+)(mitochondrial)
266834.SMc00498+
266834.SMc00819+
266834.SMc00149+
266834.SMc02162+
266834.SMc01986+
266834.SMc03144(>)
266834.SMc02788+
266834.SMc02434+
266834.SMc01339(PF13384)
266834.SMc00909(<)
266834.SMc02820(>)
266834.SMc03975+
266834.SMc02764+
266834.SMc03201+
266834.SMc00042(+)(ER)
266834.SMc05008+
266834.SMc04440+
266834.SMc00783+
266834.SMc01016+
266834.SMc00301+
266834.SMc00166(>)
266834.SMc00761+
266834.SMc02148+
266834.SMc02452(+)plastid
266834.SMc04182(<)
266834.SMc01952(>)
266834.SMc00575+
266834.SMc01002+
266834.SMc01003+
266834.SMc01823+
266834.SMc00378+
266834.SMc00195+
266834.SMc00190(PF01442)
266834.SMc04231(+)+
266834.SMc03088(PF13384)
266834.SMc03313(PF13384)
266834.SMc00073+
266834.SMc02912(>)
266834.SMc01441+
266834.SMc01797(>)
266834.SMc02120+
266834.SMc01920(>)
266834.SMc02272+
266834.SMc02690+
266834.SMc01777(>)
266834.SMc04092+
266834.SMc00704+
266834.SMc01114+
266834.SMc00091+
266834.SMc01602+
266834.SMc03199(+)(plastid)
266834.SMc03192(>)
266834.SMc03193+
266834.SMc01341(+)(mitochondrial); not used
266834.SMc00505+
266834.SMc00349+
266834.SMc01904+
266834.SMc00725+
266834.SMc01636+
266834.SMc00652+
266834.SMc03071+
266834.SMc02103(<)
266834.SMc02100(>)
266834.SMc02109+
266834.SMc02493+
266834.SMc02250+
266834.SMc00931(+)plastid
266834.SMc01359+
266834.SMc01759+
266834.SMc01286+
266834.SMc02660(>)
266834.SMc04386+
266834.SMc04388(+)(ER)
266834.SMc01802+
266834.SMc00393+
266834.SMc00394+
266834.SMc01631+
266834.SMc00339(>)
266834.SMc00808+
266834.SMc02398(PF13384)
266834.SMc00386(<)
266834.SMc04350+
266834.SMc03875+
266834.SMc03874+
266834.SMc01651(>)
266834.SMc00891(PF13384)
266834.SMc00673+
266834.SMc03010(<)
266834.SMc02017+
266834.SMc01237+
266834.SMc00460+
266834.SMc04167+
266834.SMc04164+
266834.SMc04340+
266834.SMc03866+
266834.SMc00261+
266834.SMc04297+
266834.SMc01646+
266834.SMc04146+
266834.SMc03132+
266834.SMc02023+
266834.SMc02352(PF16952)
266834.SMc02287(PF13384)
266834.SMc01090+
266834.SMc01908+
266834.SMc01708+
266834.SMc01258+
266834.SMc01949+
266834.SMc04382+
266834.SMc04045+
266834.SMc00617+
266834.SMc00108+
266834.SMc00104(<)
266834.SMc03101+
266834.SMc03052+
266834.SMc02611+
266834.SMc02291(PF13384)
266834.SMc02121+
266834.SMc02039+
266834.SMc01241(+)(plastid)
266834.SMc03800+
266834.SMc03801+
266834.SMc00138+
266834.SMc03249+
266834.SMc03027(+)(plastid)
266834.SMc02376(+)(plastid)
266834.SMc01764+
266834.SMc02978+
266834.SMc02575(+)
266834.SMc00762(+)
266834.SMc00450(+)
266834.SMc01509(+)
266834.SMc03231(+)
266834.SMc01130(+)
266834.SMc03764(+)
266834.SMc01915(+)
266834.SMc04360(+)
266834.SMc01862(+)
266834.SMc01192(+)
266834.SMc01048(+)
266834.SMc00800(+)
266834.SMc02172(+)
266834.SMc03179(+)
266834.SMc02888(+)
266834.SMc02087(+)
266834.SMc02791(+)
266834.SMc02427(+)
266834.SMc01854(+)
266834.SMc00926(+)
266834.SMc01323(+)
266834.SMc04460(+)
266834.SMc00144(+)
266834.SMc00922(+)
266834.SMc02544(+)
266834.SMc00557(+)
266834.SMc00550(+)
266834.SMc01534(+)
266834.SMc04213(+)
266834.SMc02353(+)
266834.SMc00779(+)
266834.SMc02230(+)
266834.SMc01307(+)
266834.SMc00788(+)
266834.SMc01783(+)
266834.SMc00576(+)
266834.SMc01165(+)
266834.SMc02181(+)
266834.SMc02217(+)
266834.SMc02219(+)
266834.SMc01316(+)
266834.SMc01171(+)
266834.SMc00191(+)
266834.SMc00990(+)
266834.SMc02044(+)
266834.SMc03922(+)
266834.SMc02269(+)
266834.SMc02463(+)
266834.SMc01368(+)
266834.SMc01566(+)
266834.SMc01581(+)
266834.SMc00188(+)
266834.SMc00007(+)
266834.SMc00988(+)
266834.SMc03989(+)
266834.SMc03059(+)
266834.SMc02587(+)
266834.SMc02036(+)
266834.SMc00517(+)
266834.SMc01778(+)
266834.SMc00640(+)
266834.SMc03047(+)
266834.SMc02117(+)
266834.SMc02119(+)
266834.SMc02869(+)
266834.SMc02649(+)
266834.SMc02244(+)
266834.SMc00507(+)
266834.SMc01905(+)
266834.SMc01010(+)
266834.SMc02105(+)
266834.SMc04403(+)
266834.SMc00935(+)
266834.SMc01285(+)
266834.SMc01139(+)
266834.SMc03846(+)
266834.SMc00433(+)
266834.SMc02841(+)
266834.SMc00416(+)
266834.SMc01430(+)
266834.SMc02286(+)
266834.SMc02386(+)
266834.SMc01665(+)
266834.SMc04161(+)
266834.SMc00262(+)
266834.SMc04290(+)
266834.SMc00609(+)
266834.SMc00115(+)
266834.SMc03135(+)
266834.SMc01490(+)
266834.SMc00767(+)
266834.SMc00479(+)
266834.SMc04339(+)
266834.SMc00270(+)
266834.SMc04028(+)
266834.SMc00013(+)
266834.SMc03925(+)
266834.SMc01540(+)
266834.SMc03108(+)
266834.SMc01718(+)
266834.SMc04171(+)
266834.SMc01796(+)
266834.SMc02374(+)not used
266834.SMc03808(+)
266834.SMc01666(+)
266834.SMc00916(+)
266834.SMc00241(+)
266834.SMc00825(+)
266834.SMc03023(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================