Effective results for Rhodospirillum rubrum ATCC 11170 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 57 proteins (5 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
269796.Rru_A0866PF13000ER
269796.Rru_A0848PF13000ER
269796.Rru_A2285(PF00148)mitochondrial; (mitochondrial)
269796.Rru_A0618(PF03209)mitochondrial
269796.Rru_A0857(PF00685)mitochondrial; (mitochondrial)
269796.Rru_A0628(PF03209)ER
269796.Rru_A1278(PF00685)(mitochondrial)
269796.Rru_A1477(PF05711)mitochondrial; (mitochondrial)
269796.Rru_A1463(PF00685)(mitochondrial)
269796.Rru_A3591(PF13578)mitochondrial
269796.Rru_A0147PF13000(mitochondrial)
269796.Rru_A1960(PF13578)ER
269796.Rru_A1566(PF06455)ER
269796.Rru_A0230(PF00733) (PF13537)
269796.Rru_A3121(PF00733) (PF13537)
269796.Rru_A0855(PF00733) (PF13537)
269796.Rru_A0854(PF00685)(plastid)
269796.Rru_A3028(PF00733) (PF13537)
269796.Rru_A2978(PF00148)(ER)
269796.Rru_A1989(PF00733) (PF13537)
269796.Rru_A1460(PF00733) (PF13537)
269796.Rru_A0819(PF00733) (PF13537)
269796.Rru_A0794(PF00148)(plastid)
269796.Rru_A2937(PF00733) (PF13537)
269796.Rru_A1483(PF00733) (PF13537)
269796.Rru_A0832(PF01930)
269796.Rru_A0404(PF13537)
269796.Rru_A0383(PF07653)
269796.Rru_A1392(PF00148)
269796.Rru_A0262(PF11563)
269796.Rru_A0286(PF09825)
269796.Rru_A0773(PF00148)
269796.Rru_A2351(PF05711)
269796.Rru_A2286(PF00148)
269796.Rru_A2343(PF01930)
269796.Rru_A2349(PF13578)
269796.Rru_A0622(PF00148)
269796.Rru_A0623(PF00148)
269796.Rru_A3027(PF00685)
269796.Rru_A2979(PF00148)
269796.Rru_A1279(PF00733)
269796.Rru_A0837(PF16095)
269796.Rru_A0120(PF11563)
269796.Rru_A3567(PF09731)
269796.Rru_A2745(PF13578)
269796.Rru_A0772(PF00148)
269796.Rru_A3241(PF11563)
269796.Rru_A1394(PF00148)
269796.Rru_A0810PF11523
269796.Rru_A1443(PF13578)
269796.Rru_A0793(PF00148)
269796.Rru_A0179(PF01930)
269796.Rru_A1012(PF00148)
269796.Rru_A1011(PF00148)
269796.Rru_A3309(PF00685)
269796.Rru_A1177(PF11563)
269796.Rru_A0510PF11523

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================