Metamenu

Effective results for Bacteroides fragilis NCTC 9343 (eggnog40)

Summary

Number of putative secreted proteins: 370
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 71 eukaryotic-like domains, contained in 370 proteins (62 high, 308 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272559.BF3205(PF00703) (PF02836) (PF16353) (PF02929) (PF00754) (PF02837)ER
272559.BF0157(PF16353) (PF02929) (PF00703) (PF02837) (PF02836)(ER)
272559.BF3084(PF16353) (PF00703) (PF02929) (PF02837) (PF02836)ER
272559.BF0573(PF00703) (PF00754) (PF02837) (PF02836)ER
272559.BF3085(PF13287) (PF02838) (PF00754) (PF00728)ER
272559.BF0285PF16334 PF08760 PF16335 PF17168ER
272559.BF0851(PF16353) (PF02929) (PF00703) (PF02837) (PF02836)(plastid)
272559.BF1946(PF00703) (PF00754) (PF02837) (PF02836)ER
272559.BF1815(PF00703) (PF02837) (PF02836)ER
272559.BF1811(PF02838) (PF00754) (PF00728)ER
272559.BF0665(PF16353) (PF02929) (PF00703) (PF02837) (PF02836)
272559.BF0284(PF00703) (PF02837) (PF02836)ER
272559.BF0280(PF00703) (PF02837) (PF02836)ER
272559.BF1672(PF00703) (PF02837) (PF02836)ER
272559.BF0953(PF13287) (PF02838) (PF00728)ER
272559.BF0029(PF00703) (PF02837) (PF02836)ER
272559.BF0811(PF09112) (PF09113)ER
272559.BF1813(PF02838) (PF00728)ER
272559.BF3095(PF02838) (PF00728)ER
272559.BF4059(PF02838) (PF00728)ER
272559.BF1807(PF02838) (PF00728)ER
272559.BF3083(PF01120) (PF00754)ER
272559.BF3088(PF02838) (PF00728)ER
272559.BF3187(PF01344) (PF13415)(ER)
272559.BF3611(PF13287) (PF02838) (PF00728)(ER)
272559.BF0080(PF14684) (PF03572)ER
272559.BF3816PF17039 PF00852(ER)
272559.BF0664(PF01120) (PF00754)ER
272559.BF0669(PF02838) (PF00728)ER
272559.BF3667(PF01301) (PF00754)ER
272559.BF0297PF16334 PF08760 PF16335 PF17168
272559.BF2838(PF12895) (PF07715)ER
272559.BF0574(PF01301) (PF02837)ER
272559.BF2193(PF02838) (PF00728)ER
272559.BF2517(PF14684) (PF03572)ER
272559.BF0856(PF00703) (PF02837)ER
272559.BF0329(PF02838) (PF00728)mitochondrial; (mitochondrial)
272559.BF3752(PF14684) (PF03572)ER
272559.BF3201(PF01120) (PF00754)ER
272559.BF0946PF17170ER
272559.BF3412(PF07715)ER
272559.BF0807(PF07715)ER
272559.BF0804(PF01120)ER
272559.BF0803PF05691ER
272559.BF4328(PF07715)ER
272559.BF4324(PF11175)(ER)
272559.BF1379(PF02080)ER
272559.BF1314(PF00754)ER
272559.BF1310(PF07715)ER
272559.BF0578(PF07715)ER
272559.BF0571(PF07715)ER
272559.BF0058PF17170ER
272559.BF3576(PF07715)ER
272559.BF3572(PF07715)(ER); (mitochondrial)
272559.BF3579(PF00754)ER
272559.BF3796(PF02838)ER
272559.BF3793(PF01301)ER
272559.BF1956(PF07715)ER
272559.BF0977(PF07715)(mitochondrial)
272559.BF0971(PF07715)ER
272559.BF0810(PF01120)ER
272559.BF2044(PF07715)ER
272559.BF3211(PF13905)ER
272559.BF0781(PF07715)ER
272559.BF0565(PF07715)ER
272559.BF1565(PF00953)ER
272559.BF3146(PF07715)ER
272559.BF0351(PF14684) (PF03572)(ER)
272559.BF1816(PF07715)ER
272559.BF1814(PF07971)ER
272559.BF1810(PF00703)ER
272559.BF2541(PF07715)ER
272559.BF2940(PF00754)ER
272559.BF3444(PF07715)ER
272559.BF1029(PF07715)ER
272559.BF1026(PF00953)ER
272559.BF1796(PF01120)ER
272559.BF1798(PF07715)ER
272559.BF0681(PF07715)ER
272559.BF0683(PF07971)ER
272559.BF4273(PF12704)mitochondrial
272559.BF4051(PF13088)ER
272559.BF4055(PF01344)(ER)
272559.BF4056(PF07715)ER
272559.BF0229(PF07715)ER
272559.BF1806(PF13088)ER
272559.BF1803(PF07715)ER
272559.BF1804(PF07715)ER
272559.BF3087(PF16347)(ER)
272559.BF3336(PF02080)ER
272559.BF2591(PF00953)ER
272559.BF2939(PF00754)ER
272559.BF1015(PF01531)mitochondrial
272559.BF0208PF17170ER
272559.BF4198PF17170(ER); (plastid)
272559.BF4191PF17170(mitochondrial)
272559.BF4209PF17170ER
272559.BF4208PF17170ER
272559.BF4203PF17170ER
272559.BF4207PF17170ER
272559.BF2202(PF02080)ER
272559.BF1587(PF13905)ER
272559.BF0501(PF07715)ER
272559.BF1583(PF07715)ER
272559.BF0237(PF01344)ER
272559.BF1979(PF03572)ER
272559.BF3721(PF16347)(ER)
272559.BF0349(PF07715)ER
272559.BF0341(PF07715)mitochondrial
272559.BF3724(PF07715)ER
272559.BF2214(PF12704)mitochondrial
272559.BF2215(PF12704)(mitochondrial)
272559.BF2210(PF12704)mitochondrial
272559.BF2212(PF12704)(mitochondrial)
272559.BF1902(PF01531)(mitochondrial)
272559.BF2458(PF12704)mitochondrial; (mitochondrial)
272559.BF2453(PF12704)mitochondrial
272559.BF2456(PF12704)mitochondrial; (mitochondrial)
272559.BF2454(PF12704)mitochondrial
272559.BF2455(PF12704)mitochondrial
272559.BF2697(PF07715)ER
272559.BF4184(PF07944)ER
272559.BF4213PF17170ER
272559.BF0759(PF07715)ER
272559.BF0536(PF07715)ER
272559.BF1914(PF00953)ER
272559.BF3199(PF07715)ER
272559.BF1293(PF02080)ER
272559.BF1722(PF07715)ER
272559.BF4226(PF00216)(mitochondrial)
272559.BF1611(PF12704)mitochondrial
272559.BF1618(PF07715)ER
272559.BF1439(PF12704)mitochondrial
272559.BF1435(PF12704)mitochondrial
272559.BF1431(PF12704)mitochondrial; (mitochondrial)
272559.BF1433(PF12704)mitochondrial
272559.BF0520(PF16347)ER
272559.BF4089(PF11175)(mitochondrial)
272559.BF0414PF17170(ER)
272559.BF3878PF17170ER
272559.BF3877PF17170ER
272559.BF3876PF17170ER
272559.BF2907(PF07715)(ER); ER
272559.BF0167(PF01344)ER
272559.BF4190PF17170ER
272559.BF2708(PF07715)ER
272559.BF2702(PF02080)ER
272559.BF0881(PF03572)ER
272559.BF4206PF17170ER
272559.BF1609(PF12704)(mitochondrial)
272559.BF4036PF17170ER
272559.BF0028(PF01120)ER
272559.BF0061PF17170mitochondrial; (mitochondrial)
272559.BF0267(PF07715)ER
272559.BF1933(PF12704)(mitochondrial)
272559.BF3464(PF00953)ER
272559.BF2390(PF13905)ER
272559.BF2805(PF04432)(mitochondrial)
272559.BF2733PF17170ER
272559.BF0893(PF07715)(mitochondrial); mitochondrial
272559.BF4172(PF03572)ER
272559.BF4174(PF07944)ER
272559.BF0659(PF07971)ER
272559.BF0279(PF03663)ER
272559.BF2937(PF13088)ER
272559.BF2654PF17170ER
272559.BF0866(PF07715)mitochondrial; (mitochondrial)
272559.BF0711(PF07715)ER
272559.BF4166(PF00754)ER
272559.BF4169(PF07715)ER
272559.BF0663(PF00754)ER; (ER)
272559.BF1719(PF07715)ER
272559.BF0044PF17170ER
272559.BF0287(PF00754)ER
272559.BF0286(PF07715)(ER)
272559.BF0281(PF07944)ER
272559.BF0282(PF07944)ER
272559.BF0288(PF07715)mitochondrial
272559.BF3068(PF07715)ER
272559.BF3666PF17170ER
272559.BF3712(PF07715)ER
272559.BF3242(PF01120)ER
272559.BF2539(PF07715)ER
272559.BF4371PF17170ER
272559.BF0871(PF07715)ER
272559.BF4281(PF13905)ER
272559.BF4284PF17170ER
272559.BF0295(PF03663)ER
272559.BF0298(PF07971)ER
272559.BF3657(PF07971)ER
272559.BF1876(PF07715)ER
272559.BF3236(PF07971)(ER)
272559.BF3836PF17170ER
272559.BF3834PF17170ER
272559.BF4106(PF07715)ER
272559.BF0594(PF07715)ER
272559.BF0334(PF07715)(mitochondrial)
272559.BF3642(PF07715)(ER)
272559.BF3132(PF12895)ER
272559.BF3648(PF00953)ER
272559.BF2195(PF07715)ER
272559.BF3221PF17170(mitochondrial)
272559.BF3540(PF02544)ER
272559.BF3358(PF12704)mitochondrial
272559.BF3097(PF07715)mitochondrial
272559.BF1692PF17170ER
272559.BF0037PF17170ER
272559.BF4132(PF07715)ER
272559.BF0328(PF00703) (PF02837) (PF02836)
272559.BF3240PF17170(ER)
272559.BF3710(PF13088)mitochondrial
272559.BF1986(PF07715)ER
272559.BF2761PF12812ER
272559.BF2164(PF07715)ER
272559.BF0821(PF07715)ER
272559.BF0824PF17170(mitochondrial)
272559.BF0625PF17170ER
272559.BF1204(PF07715)mitochondrial; (mitochondrial)
272559.BF4344(PF07715)ER
272559.BF4128(PF13905)ER
272559.BF2942(PF07715)ER; (ER)
272559.BF1336(PF07715)ER; (ER)
272559.BF1445(PF12704)mitochondrial
272559.BF0316(PF07944)ER
272559.BF0551(PF07715)ER
272559.BF3024(PF07715)ER
272559.BF1992(PF07715)ER
272559.BF1991(PF07715)ER
272559.BF3682(PF00953)ER
272559.BF3688(PF01531)(mitochondrial); mitochondrial
272559.BF1849(PF03415)ER
272559.BF3598(PF00216)(mitochondrial)
272559.BF3591(PF01120)ER
272559.BF2084(PF07715)(ER); ER
272559.BF2790PF02357(mitochondrial)
272559.BF2793(PF04432)(mitochondrial)
272559.BF2157(PF03572)ER
272559.BF1059(PF00754)(ER)
272559.BF4248(PF07715)(ER)
272559.BF4335(PF03572)ER
272559.BF4061(PF01301)ER
272559.BF4062(PF07715)(ER)
272559.BF0492PF14771ER
272559.BF0493PF14771ER
272559.BF0306PF17170ER
272559.BF0302(PF00754)mitochondrial
272559.BF0018(PF07715)ER
272559.BF2365(PF03572)ER
272559.BF0686(PF07971)ER
272559.BF2098(PF12704)mitochondrial; (mitochondrial)
272559.BF2096PF17170ER
272559.BF3307(PF07715)ER
272559.BF3308(PF03663)ER
272559.BF0795(PF02080)(mitochondrial)
272559.BF2552PF03727 PF00349
272559.BF0812(PF13087) (PF13086)
272559.BF3544(PF13087) (PF13086)
272559.BF2236(PF05970) PF02689
272559.BF3720(PF13155) (PF01807)
272559.BF0754(PF00216)(mitochondrial)
272559.BF2270(PF07715)(mitochondrial)
272559.BF3283(PF13155) (PF01807)
272559.BF2029(PF13087) (PF13086)
272559.BF1124(PF13087) (PF13086)
272559.BF0890(PF07715)(mitochondrial)
272559.BF0381(PF07715)(ER)
272559.BF3075(PF07715)(mitochondrial)
272559.BF3258(PF07715)(mitochondrial)
272559.BF3709(PF13088)(mitochondrial)
272559.BF0661(PF07715)plastid
272559.BF1470(PF13155) (PF01807)
272559.BF0909(PF05970) PF02689
272559.BF3581(PF07715)(mitochondrial)
272559.BF3969(PF07837) (PF02971)
272559.BF3372(PF13087) (PF13086)
272559.BF4246(PF07715)(plastid)
272559.BF4256(PF07715)
272559.BF4323(PF07715)
272559.BF1552(PF00908)
272559.BF1557(PF01501)
272559.BF0152(PF16011)
272559.BF3776(PF03054)
272559.BF0518(PF07715)
272559.BF3746(PF07715)
272559.BF1568(PF00216)
272559.BF3141(PF13905)
272559.BF0682(PF07971)
272559.BF0174(PF03054)
272559.BF3086(PF16347)
272559.BF3883PF00240
272559.BF1012(PF00908)
272559.BF1743(PF09346)
272559.BF1740(PF09346)
272559.BF4192(PF02709)
272559.BF4202(PF01501)
272559.BF0769(PF02965)
272559.BF0186(PF02709)
272559.BF0184(PF01501)
272559.BF0185(PF05686)
272559.BF0509(PF12704)
272559.BF2325(PF01807)
272559.BF1009PF02357
272559.BF1754(PF09346)
272559.BF1750(PF09346)
272559.BF3837PF17170
272559.BF0406PF17170
272559.BF1917(PF00216)
272559.BF2487(PF00302)
272559.BF4220(PF00216)
272559.BF0257(PF00953)
272559.BF1748(PF09346)
272559.BF2275(PF00216)
272559.BF3473(PF00216)
272559.BF2902(PF02965)
272559.BF1343(PF03054)
272559.BF1280(PF16347)
272559.BF1730(PF13155)
272559.BF0731PF02357
272559.BF1602(PF12704)
272559.BF0081(PF16347)
272559.BF0263(PF00216)
272559.BF3460PF00852
272559.BF3466PF02357
272559.BF4178(PF07715)
272559.BF1415(PF07715)
272559.BF0510(PF12704)
272559.BF1258(PF13155)
272559.BF1709PF02357
272559.BF3679(PF00216)
272559.BF2385(PF00908)
272559.BF3255(PF07715)
272559.BF3920(PF07715)
272559.BF0864(PF07715)
272559.BF0868(PF07715)
272559.BF1367PF02357
272559.BF2538(PF02080)
272559.BF2757(PF03415)
272559.BF4020PF02357
272559.BF1893PF02357
272559.BF3722(PF16347)
272559.BF2742(PF05693)
272559.BF3452(PF00908)
272559.BF2749(PF01991)
272559.BF4368(PF00302)
272559.BF4369(PF05192)
272559.BF0599(PF16314)
272559.BF0590(PF07715)not used
272559.BF0592(PF07715)not used
272559.BF0596(PF07715)not used
272559.BF1512(PF07715)
272559.BF1883(PF02080)
272559.BF2607PF07959
272559.BF2606PF02357
272559.BF3828(PF02709)
272559.BF0938(PF01715)
272559.BF2774(PF12895)
272559.BF1188PF02357
272559.BF0614(PF02709)
272559.BF1967(PF00216)
272559.BF3699PF02357
272559.BF2505(PF00216)
272559.BF2506(PF00216)
272559.BF1190(PF02080)
272559.BF0825(PF01715)
272559.BF3689PF00852
272559.BF3594(PF02080)
272559.BF3972(PF05192)
272559.BF1549PF02357
272559.BF0496(PF05192)
272559.BF2967(PF02965)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================