Effective results for Leifsonia xyli subsp. xyli str. CTCB07 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 25 proteins (15 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
281090.Lxx07795(PF01183)(ER)
281090.Lxx05410(PF11070)ER
281090.Lxx21160PF13936
281090.Lxx02470(PF01183)
281090.Lxx18760PF13936
281090.Lxx05430PF13936
281090.Lxx07770PF13936
281090.Lxx22710(PF01183)
281090.Lxx24220(PF01183)
281090.Lxx00570PF13936
281090.Lxx15810PF13936
281090.Lxx04320PF13936
281090.Lxx09390PF13936
281090.Lxx20930(PF05495)
281090.Lxx20610PF13936
281090.Lxx13770PF13936
281090.Lxx10070PF13936
281090.Lxx14430PF13936
281090.Lxx05030(PF01183)
281090.Lxx05960PF13936
281090.Lxx04980(PF04765)
281090.Lxx14930PF13936
281090.Lxx03750(PF01183)
281090.Lxx22540PF13936
281090.Lxx00400(PF01183)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================