Effective results for Prosthecochloris aestuarii DSM 271 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
290512.Paes_0222				(PF02374)	mitochondrial
290512.Paes_2183				(PF01419)	ER
290512.Paes_0115				(PF02374)	(mitochondrial)
290512.Paes_1958				(PF02374)	mitochondrial
290512.Paes_1962				(PF02374)	(mitochondrial); mitochondrial
290512.Paes_1353				(PF02374)	(mitochondrial)
290512.Paes_0022				(PF12159) (PF10693)
290512.Paes_1436				(PF11965) (PF02514)
290512.Paes_1974				(PF11965) (PF02514)
290512.Paes_1969				(PF11965) (PF02514)
290512.Paes_1001				PF10046	(ER)
290512.Paes_2261				(PF02873)
290512.Paes_2318				(PF02873)
290512.Paes_2098				(PF13565)
290512.Paes_1679				(PF02374)
290512.Paes_1438				(PF01078)
290512.Paes_2327				(PF02873)
290512.Paes_1275				(PF02514)
290512.Paes_1276				(PF01078)
290512.Paes_1279				(PF02514)
290512.Paes_0649				(PF13565)
290512.Paes_0645				(PF13565)
290512.Paes_0074				(PF13565)
290512.Paes_1437				(PF01078)
290512.Paes_0063				(PF13565)
290512.Paes_0118				(PF09366)
290512.Paes_1089				(PF16114)
290512.Paes_0448				(PF13455)
290512.Paes_2231				(PF13281)
290512.Paes_1100				(PF13565)
290512.Paes_0512				(PF01078)
290512.Paes_0239				(PF09366)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================