Effective results for Nitrobacter sp. Nb-311A (eggnog40)
Summary
Number of putative secreted proteins: 398
- Predicted by T4SEpre: 105
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 321 proteins (172 high, 149 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 314253.NB311A_09596 | PF13276 PF00665 | mitochondrial | |||
| 314253.NB311A_19886 | PF13276 PF00665 | mitochondrial; (mitochondrial) | |||
| 314253.NB311A_08647 | PF13276 PF00665 | mitochondrial; (mitochondrial) | |||
| 314253.NB311A_10705 | (PF03050) (PF02371) | (mitochondrial) | |||
| 314253.NB311A_08784 | PF13276 PF00665 | mitochondrial; (mitochondrial) | |||
| 314253.NB311A_09541 | (PF01609) | (mitochondrial) | |||
| 314253.NB311A_02576 | PF00665 | (mitochondrial) | |||
| 314253.NB311A_04509 | (PF00565) | ER | |||
| 314253.NB311A_08208 | + | (mitochondrial) | |||
| 314253.NB311A_16539 | PF01695 | (mitochondrial) | |||
| 314253.NB311A_13136 | + | ER | |||
| 314253.NB311A_15097 | + | (mitochondrial) | |||
| 314253.NB311A_04639 | + | (mitochondrial) | |||
| 314253.NB311A_07433 | (PF14295) | ER | |||
| 314253.NB311A_15082 | (PF11162) | mitochondrial; ER | |||
| 314253.NB311A_01464 | (PF11162) | ER | |||
| 314253.NB311A_13636 | (PF00239) | (mitochondrial) | |||
| 314253.NB311A_01479 | (PF11162) | (mitochondrial) | |||
| 314253.NB311A_06723 | PF13683 | (mitochondrial) | |||
| 314253.NB311A_06121 | (PF04588) | ER | |||
| 314253.NB311A_02606 | + | mitochondrial | |||
| 314253.NB311A_11832 | + | ER | |||
| 314253.NB311A_10650 | PF00665 PF01695 | (mitochondrial) | |||
| 314253.NB311A_12147 | + | ER | |||
| 314253.NB311A_13871 | + | ER | |||
| 314253.NB311A_12894 | + | mitochondrial | |||
| 314253.NB311A_18633 | PF00665 | mitochondrial | |||
| 314253.NB311A_03809 | + | (mitochondrial) | |||
| 314253.NB311A_19612 | (PF00565) | ER | |||
| 314253.NB311A_16914 | + | ER | |||
| 314253.NB311A_05825 | (PF00239) | mitochondrial | |||
| 314253.NB311A_04064 | + | mitochondrial | |||
| 314253.NB311A_14942 | + | ER | |||
| 314253.NB311A_14797 | + | (mitochondrial) | |||
| 314253.NB311A_02376 | + | (mitochondrial) | |||
| 314253.NB311A_13661 | PF01695 | (mitochondrial) | |||
| 314253.NB311A_18873 | + | (ER) | |||
| 314253.NB311A_16319 | + | ER | |||
| 314253.NB311A_04489 | PF04442 | ER | |||
| 314253.NB311A_18461 | (PF11162) | ER | |||
| 314253.NB311A_19831 | (PF02371) | mitochondrial; (mitochondrial) | |||
| 314253.NB311A_14195 | (PF05239) | ER | |||
| 314253.NB311A_06518 | (PF11162) | ER | |||
| 314253.NB311A_02074 | (PF04588) | ER | |||
| 314253.NB311A_07823 | (PF05050) | mitochondrial | |||
| 314253.NB311A_06683 | + | ER | |||
| 314253.NB311A_15672 | + | (mitochondrial) | |||
| 314253.NB311A_02189 | (PF02790) | mitochondrial | |||
| 314253.NB311A_14982 | + | mitochondrial | |||
| 314253.NB311A_09034 | PF00665 | (mitochondrial) | |||
| 314253.NB311A_09296 | (PF05239) | (mitochondrial); (plastid) | |||
| 314253.NB311A_11292 | (PF05239) | ER | |||
| 314253.NB311A_14350 | + | ER | |||
| 314253.NB311A_21081 | + | ER | |||
| 314253.NB311A_13566 | (PF13565) | (mitochondrial); mitochondrial | |||
| 314253.NB311A_15507 | + | ER | |||
| 314253.NB311A_16182 | + | mitochondrial | |||
| 314253.NB311A_09361 | (PF00239) | (mitochondrial) | |||
| 314253.NB311A_02316 | + | ER | |||
| 314253.NB311A_00170 | (PF00565) | ER | |||
| 314253.NB311A_13546 | (PF00239) | (mitochondrial) | |||
| 314253.NB311A_08593 | (PF02790) | mitochondrial | |||
| 314253.NB311A_06011 | (PF00565) | ER | |||
| 314253.NB311A_08789 | (PF02371) | mitochondrial | |||
| 314253.NB311A_18396 | + | mitochondrial | |||
| 314253.NB311A_09546 | PF13276 PF13683 | ||||
| 314253.NB311A_10615 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_12941 | (PF02195) (PF01555) | ||||
| 314253.NB311A_17069 | PF13276 PF00665 | ||||
| 314253.NB311A_10620 | PF13276 PF00665 | ||||
| 314253.NB311A_19846 | PF13276 PF13683 | ||||
| 314253.NB311A_20471 | PF13276 PF00665 | ||||
| 314253.NB311A_00630 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_09149 | + | PF04442 | |||
| 314253.NB311A_16524 | (PF02195) (PF01555) | ||||
| 314253.NB311A_17906 | (PF05598) (PF01609) | ||||
| 314253.NB311A_20041 | PF13276 PF00665 | ||||
| 314253.NB311A_20046 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_08884 | PF00665 (PF13565) | ||||
| 314253.NB311A_05483 | + | PF04442 | |||
| 314253.NB311A_17004 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_17009 | PF13276 PF00665 | ||||
| 314253.NB311A_12464 | PF00665 (PF13565) | ||||
| 314253.NB311A_21326 | (PF02195) (PF01555) | ||||
| 314253.NB311A_14100 | (PF05598) (PF01609) | ||||
| 314253.NB311A_10001 | (PF05598) (PF01609) | ||||
| 314253.NB311A_08618 | + | PF04442 | |||
| 314253.NB311A_00280 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_00260 | PF13276 PF00665 | not used | |||
| 314253.NB311A_09806 | (PF05239) | (mitochondrial) | |||
| 314253.NB311A_16379 | (PF05598) (PF01609) | ||||
| 314253.NB311A_12402 | PF00665 (PF13565) | ||||
| 314253.NB311A_16404 | PF00665 | (plastid) | |||
| 314253.NB311A_21166 | (PF05598) | (plastid) | |||
| 314253.NB311A_21161 | (PF01609) | (plastid) | |||
| 314253.NB311A_20006 | PF13276 PF00665 | ||||
| 314253.NB311A_20001 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_09711 | PF13276 PF00665 | ||||
| 314253.NB311A_09716 | PF00665 | plastid | |||
| 314253.NB311A_18653 | (PF02195) (PF01555) | ||||
| 314253.NB311A_13796 | PF00665 (PF13565) | ||||
| 314253.NB311A_10183 | (PF05598) (PF01609) | ||||
| 314253.NB311A_20101 | PF00665 (PF13565) | ||||
| 314253.NB311A_00650 | PF00665 (PF13565) | ||||
| 314253.NB311A_00120 | (PF02195) (PF01555) | ||||
| 314253.NB311A_10308 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_10303 | PF13276 PF00665 | ||||
| 314253.NB311A_09706 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_18668 | (PF05598) (PF01609) | ||||
| 314253.NB311A_11907 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_20111 | PF00665 (PF13565) | ||||
| 314253.NB311A_00135 | PF00665 (PF13565) | ||||
| 314253.NB311A_11912 | PF13276 PF00665 | ||||
| 314253.NB311A_03584 | (PF05598) (PF01609) | ||||
| 314253.NB311A_09726 | + | PF13683 | |||
| 314253.NB311A_02209 | + | PF04442 | |||
| 314253.NB311A_04479 | (PF05598) (PF01609) | ||||
| 314253.NB311A_00110 | (PF02195) (PF01555) | ||||
| 314253.NB311A_04684 | + | (mitochondrial) | |||
| 314253.NB311A_19100 | + | (plastid) | |||
| 314253.NB311A_09371 | (PF02195) (PF01555) | ||||
| 314253.NB311A_03019 | (PF05598) (PF01609) | ||||
| 314253.NB311A_13381 | (PF02195) (PF01555) | ||||
| 314253.NB311A_13556 | PF00665 (PF13565) | ||||
| 314253.NB311A_13806 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_14060 | PF13276 PF00665 | ||||
| 314253.NB311A_14065 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_06793 | (PF02195) (PF01555) | ||||
| 314253.NB311A_19607 | + | (plastid) | |||
| 314253.NB311A_19911 | PF13276 PF00665 | ||||
| 314253.NB311A_13801 | PF13276 PF00665 | ||||
| 314253.NB311A_09099 | (PF05598) (PF01609) | ||||
| 314253.NB311A_17074 | PF01527 | (mitochondrial) | |||
| 314253.NB311A_09786 | PF01527 | not used | |||
| 314253.NB311A_17676 | (PF10544) | ||||
| 314253.NB311A_09236 | (PF00565) | ||||
| 314253.NB311A_07873 | + | ||||
| 314253.NB311A_10765 | + | ||||
| 314253.NB311A_03519 | (PF01609) | ||||
| 314253.NB311A_02879 | + | ||||
| 314253.NB311A_11417 | + | ||||
| 314253.NB311A_19921 | (PF02371) | ||||
| 314253.NB311A_21375 | + | ||||
| 314253.NB311A_04529 | + | ||||
| 314253.NB311A_17706 | (PF05239) | ||||
| 314253.NB311A_11105 | + | ||||
| 314253.NB311A_19821 | (PF02371) | ||||
| 314253.NB311A_08799 | PF13683 | ||||
| 314253.NB311A_04354 | (PF14237) | ||||
| 314253.NB311A_02164 | + | ||||
| 314253.NB311A_17249 | + | ||||
| 314253.NB311A_17484 | + | ||||
| 314253.NB311A_10590 | PF01695 | ||||
| 314253.NB311A_02581 | PF01695 | ||||
| 314253.NB311A_19841 | PF01527 | ||||
| 314253.NB311A_20476 | PF01527 | ||||
| 314253.NB311A_13481 | PF13683 | ||||
| 314253.NB311A_00190 | (PF02371) | ||||
| 314253.NB311A_02179 | + | ||||
| 314253.NB311A_09216 | PF01527 | ||||
| 314253.NB311A_17656 | (PF03050) | ||||
| 314253.NB311A_09856 | PF01695 | ||||
| 314253.NB311A_18591 | PF00665 | ||||
| 314253.NB311A_17344 | + | ||||
| 314253.NB311A_12459 | PF01527 | ||||
| 314253.NB311A_15882 | + | ||||
| 314253.NB311A_00175 | + | ||||
| 314253.NB311A_19896 | PF01527 | ||||
| 314253.NB311A_19891 | (PF02371) | ||||
| 314253.NB311A_09486 | PF01527 | not used | |||
| 314253.NB311A_20196 | (PF05239) | ||||
| 314253.NB311A_13586 | PF06597 | ||||
| 314253.NB311A_13581 | PF06597 | ||||
| 314253.NB311A_19095 | + | ||||
| 314253.NB311A_21331 | (PF00239) | ||||
| 314253.NB311A_16994 | (PF05050) | ||||
| 314253.NB311A_08083 | (PF02195) | ||||
| 314253.NB311A_12407 | (PF02371) | ||||
| 314253.NB311A_18618 | PF01695 | ||||
| 314253.NB311A_17649 | PF01695 | ||||
| 314253.NB311A_09686 | (PF01609) | ||||
| 314253.NB311A_12679 | + | ||||
| 314253.NB311A_09666 | (PF02371) | ||||
| 314253.NB311A_09466 | (PF00239) | ||||
| 314253.NB311A_02929 | (PF03050) | ||||
| 314253.NB311A_04998 | (PF00239) | ||||
| 314253.NB311A_12469 | (PF10544) | ||||
| 314253.NB311A_20526 | (PF00565) | ||||
| 314253.NB311A_21365 | + | not used | |||
| 314253.NB311A_00610 | (PF02371) | ||||
| 314253.NB311A_14922 | (PF01555) | ||||
| 314253.NB311A_21146 | + | ||||
| 314253.NB311A_00270 | PF01527 | ||||
| 314253.NB311A_13591 | PF06597 | ||||
| 314253.NB311A_13596 | PF06597 | ||||
| 314253.NB311A_06728 | (PF01555) | ||||
| 314253.NB311A_09901 | PF13683 | ||||
| 314253.NB311A_09591 | (PF02371) | ||||
| 314253.NB311A_09871 | (PF00239) | ||||
| 314253.NB311A_09691 | (PF02371) | ||||
| 314253.NB311A_03734 | (PF01697) | ||||
| 314253.NB311A_09586 | PF01527 | ||||
| 314253.NB311A_06593 | (PF05050) | ||||
| 314253.NB311A_02939 | PF01527 | ||||
| 314253.NB311A_12479 | (PF01555) | ||||
| 314253.NB311A_08198 | + | ||||
| 314253.NB311A_10830 | + | ||||
| 314253.NB311A_13026 | (PF12200) | ||||
| 314253.NB311A_00600 | PF01527 | ||||
| 314253.NB311A_14000 | PF00665 | ||||
| 314253.NB311A_00265 | (PF13565) | ||||
| 314253.NB311A_10488 | (PF00239) | ||||
| 314253.NB311A_09641 | (PF05050) | ||||
| 314253.NB311A_09481 | (PF03050) | ||||
| 314253.NB311A_13686 | PF01695 | ||||
| 314253.NB311A_13681 | PF00665 | ||||
| 314253.NB311A_16579 | PF00665 | ||||
| 314253.NB311A_11537 | + | ||||
| 314253.NB311A_15302 | (PF05239) | ||||
| 314253.NB311A_00700 | PF01527 | ||||
| 314253.NB311A_00705 | PF01695 | not used | |||
| 314253.NB311A_06708 | PF00665 | ||||
| 314253.NB311A_10498 | PF00665 | ||||
| 314253.NB311A_10258 | (PF01609) | ||||
| 314253.NB311A_08702 | (PF14237) | ||||
| 314253.NB311A_13071 | (PF05598) | ||||
| 314253.NB311A_09651 | PF13683 | ||||
| 314253.NB311A_09656 | PF13276 | ||||
| 314253.NB311A_17169 | + | ||||
| 314253.NB311A_13676 | (PF02195) | ||||
| 314253.NB311A_12414 | PF00665 | ||||
| 314253.NB311A_04948 | (PF12200) | not used | |||
| 314253.NB311A_18863 | (PF05239) | ||||
| 314253.NB311A_12419 | PF01695 | ||||
| 314253.NB311A_05725 | (PF12200) | ||||
| 314253.NB311A_15952 | + | ||||
| 314253.NB311A_07373 | PF07460 | ||||
| 314253.NB311A_19881 | (PF02371) | ||||
| 314253.NB311A_00710 | PF00665 | ||||
| 314253.NB311A_00715 | PF01695 | ||||
| 314253.NB311A_13416 | PF00665 | ||||
| 314253.NB311A_06713 | PF01695 | ||||
| 314253.NB311A_09004 | (PF00239) | ||||
| 314253.NB311A_06718 | (PF02371) | ||||
| 314253.NB311A_10268 | PF01527 | ||||
| 314253.NB311A_02652 | PF01527 | ||||
| 314253.NB311A_18658 | PF00665 | ||||
| 314253.NB311A_09536 | (PF05598) | ||||
| 314253.NB311A_12424 | (PF00239) | ||||
| 314253.NB311A_16559 | (PF00239) | ||||
| 314253.NB311A_13791 | PF01527 | ||||
| 314253.NB311A_15367 | + | ||||
| 314253.NB311A_21360 | PF01527 | ||||
| 314253.NB311A_00010 | PF01695 | ||||
| 314253.NB311A_08879 | PF01527 | ||||
| 314253.NB311A_12931 | (PF03050) | not used | |||
| 314253.NB311A_10273 | (PF02371) | not used | |||
| 314253.NB311A_12684 | + | ||||
| 314253.NB311A_10278 | PF00665 | ||||
| 314253.NB311A_08652 | (PF02371) | ||||
| 314253.NB311A_08657 | PF01527 | ||||
| 314253.NB311A_09701 | PF01527 | ||||
| 314253.NB311A_08729 | (PF03050) | ||||
| 314253.NB311A_02647 | PF01695 | ||||
| 314253.NB311A_13656 | (PF09996) | ||||
| 314253.NB311A_09791 | PF00665 | ||||
| 314253.NB311A_18848 | (PF01609) | ||||
| 314253.NB311A_16544 | (PF09996) | ||||
| 314253.NB311A_12322 | PF00665 | ||||
| 314253.NB311A_12327 | PF01695 | ||||
| 314253.NB311A_16434 | PF00665 | ||||
| 314253.NB311A_16439 | PF01695 | ||||
| 314253.NB311A_05850 | (PF01555) | ||||
| 314253.NB311A_20806 | (PF02371) | ||||
| 314253.NB311A_00275 | PF13276 | ||||
| 314253.NB311A_20116 | PF01527 | ||||
| 314253.NB311A_19836 | PF13683 | ||||
| 314253.NB311A_15482 | (PF00102) | ||||
| 314253.NB311A_00130 | PF01527 | ||||
| 314253.NB311A_00645 | PF01527 | ||||
| 314253.NB311A_00005 | PF00665 | ||||
| 314253.NB311A_05510 | PF00665 | ||||
| 314253.NB311A_05515 | PF01695 | ||||
| 314253.NB311A_01170 | PF00665 | ||||
| 314253.NB311A_08642 | (PF02371) | ||||
| 314253.NB311A_09731 | PF13276 | ||||
| 314253.NB311A_09029 | (PF02371) | ||||
| 314253.NB311A_09024 | PF00665 | ||||
| 314253.NB311A_09601 | PF01527 | ||||
| 314253.NB311A_02672 | (PF01555) | ||||
| 314253.NB311A_10510 | PF00665 | ||||
| 314253.NB311A_10515 | PF01695 | ||||
| 314253.NB311A_16207 | (PF01609) | ||||
| 314253.NB311A_05981 | + | ||||
| 314253.NB311A_16444 | PF00665 | ||||
| 314253.NB311A_16449 | PF01695 | ||||
| 314253.NB311A_10730 | PF01695 | ||||
| 314253.NB311A_19652 | + | ||||
| 314253.NB311A_03039 | + | ||||
| 314253.NB311A_03034 | (PF05239) | ||||
| 314253.NB311A_20906 | + | ||||
| 314253.NB311A_15907 | + | ||||
| 314253.NB311A_19826 | PF13683 | not used | |||
| 314253.NB311A_04444 | + | ||||
| 314253.NB311A_08819 | (PF01609) | ||||
| 314253.NB311A_10198 | + | ||||
| 314253.NB311A_20126 | PF01695 | ||||
| 314253.NB311A_19797 | PF00665 | ||||
| 314253.NB311A_14240 | + | ||||
| 314253.NB311A_05503 | (PF02790) | not used | |||
| 314253.NB311A_00360 | PF01695 | not used | |||
| 314253.NB311A_01165 | PF01695 | ||||
| 314253.NB311A_08749 | (PF00239) | ||||
| 314253.NB311A_09346 | (PF05239) | ||||
| 314253.NB311A_10503 | PF01695 | ||||
| 314253.NB311A_09501 | (PF03050) | ||||
| 314253.NB311A_18221 | + | ||||
| 314253.NB311A_12347 | PF01695 | ||||
| 314253.NB311A_10720 | PF00665 | ||||
| 314253.NB311A_09671 | PF01527 | ||||
| 314253.NB311A_04879 | PF01695 | ||||
| 314253.NB311A_05870 | + | ||||
| 314253.NB311A_13161 | (PF05239) | ||||
| 314253.NB311A_16589 | (PF00239) | ||||
| 314253.NB311A_16584 | PF01695 | ||||
| 314253.NB311A_20351 | (PF05239) | ||||
| 314253.NB311A_19811 | (PF02371) | ||||
| 314253.NB311A_21086 | (PF00239) | ||||
| 314253.NB311A_20136 | PF01695 | ||||
| 314253.NB311A_20131 | PF00665 | ||||
| 314253.NB311A_00370 | PF01695 | ||||
| 314253.NB311A_01574 | PF01695 | ||||
| 314253.NB311A_10223 | (PF01609) | ||||
| 314253.NB311A_09751 | PF01695 | ||||
| 314253.NB311A_17199 | + | ||||
| 314253.NB311A_09571 | (PF03050) | ||||
| 314253.NB311A_02236 | + | ||||
| 314253.NB311A_04913 | PF00665 | ||||
| 314253.NB311A_16664 | + | ||||
| 314253.NB311A_04864 | PF13683 | ||||
| 314253.NB311A_04869 | PF00665 | ||||
| 314253.NB311A_13371 | (PF00239) | ||||
| 314253.NB311A_19482 | + | ||||
| 314253.NB311A_12397 | PF01527 | ||||
| 314253.NB311A_11592 | (PF01442) | ||||
| 314253.NB311A_19802 | PF01695 | ||||
| 314253.NB311A_15927 | (PF05239) | ||||
| 314253.NB311A_13991 | + | ||||
| 314253.NB311A_10083 | (PF03050) | ||||
| 314253.NB311A_09986 | PF01695 | ||||
| 314253.NB311A_09981 | PF00665 | ||||
| 314253.NB311A_01569 | PF00665 | ||||
| 314253.NB311A_00945 | + | ||||
| 314253.NB311A_09186 | (PF03050) | ||||
| 314253.NB311A_08692 | PF01527 | ||||
| 314253.NB311A_13571 | PF01527 | ||||
| 314253.NB311A_08769 | PF00665 | ||||
| 314253.NB311A_18608 | PF00665 | ||||
| 314253.NB311A_09566 | PF13683 | ||||
| 314253.NB311A_18601 | PF01695 | ||||
| 314253.NB311A_13766 | PF01695 | ||||
| 314253.NB311A_16277 | PF01695 | ||||
| 314253.NB311A_16272 | PF00665 | ||||
| 314253.NB311A_10700 | (PF01609) | ||||
| 314253.NB311A_19472 | (PF01609) | ||||
| 314253.NB311A_19876 | PF13683 | ||||
| 314253.NB311A_08824 | (PF05598) | ||||
| 314253.NB311A_10895 | + | ||||
| 314253.NB311A_19906 | (PF02371) | not used | |||
| 314253.NB311A_08919 | PF01695 | ||||
| 314253.NB311A_10098 | PF01527 | ||||
| 314253.NB311A_06808 | (PF03050) | ||||
| 314253.NB311A_06803 | (PF03050) | ||||
| 314253.NB311A_00310 | (PF05050) | ||||
| 314253.NB311A_01225 | + | ||||
| 314253.NB311A_08173 | (PF14237) | ||||
| 314253.NB311A_17634 | + | ||||
| 314253.NB311A_17049 | PF00665 | ||||
| 314253.NB311A_08774 | PF01695 | ||||
| 314253.NB311A_09771 | (PF03050) | ||||
| 314253.NB311A_12362 | + | ||||
| 314253.NB311A_02964 | + | ||||
| 314253.NB311A_09421 | (PF00239) | ||||
| 314253.NB311A_06623 | (PF04218) | ||||
| 314253.NB311A_02561 | (PF05050) | ||||
| 314253.NB311A_10600 | (PF00239) | ||||
| 314253.NB311A_20091 | (PF03050) | ||||
| 314253.NB311A_07278 | + | ||||
| 314253.NB311A_20071 | PF01527 | ||||
| 314253.NB311A_20076 | PF01527 | ||||
| 314253.NB311A_19265 | + | ||||
| 314253.NB311A_00090 | (PF01609) | ||||
| 314253.NB311A_21271 | (PF02195) | ||||
| 314253.NB311A_00435 | PF00665 | ||||
| 314253.NB311A_00430 | PF01695 | not used | |||
| 314253.NB311A_13551 | PF13683 | ||||
| 314253.NB311A_09169 | (PF02790) | not used | |||
| 314253.NB311A_09766 | (PF02371) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.1 (1/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.1 (1/10 KEGG proteins)
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
