Effective results for Roseovarius sp. 217 (eggnog40)

Summary

Number of putative secreted proteins: 101
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 101 proteins (1 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314264.ROS217_20562(PF16350) (PF01571) (PF08669)ER
314264.ROS217_14471(PF01571) (PF08669)mitochondrial
314264.ROS217_07025(PF16350) (PF01571) (PF08669)(ER)
314264.ROS217_23780(PF01571) (PF08669)(mitochondrial)
314264.ROS217_16740(PF03567)(mitochondrial)
314264.ROS217_13551(PF16350) (PF01571) (PF08669)
314264.ROS217_03435(PF02630)(mitochondrial)
314264.ROS217_08835PF13405ER
314264.ROS217_06434(PF02630)mitochondrial
314264.ROS217_03745(PF10013)(mitochondrial)
314264.ROS217_01195(PF02630)ER
314264.ROS217_03005(PF02630)(ER)
314264.ROS217_00850(PF05990)(mitochondrial); (plastid)
314264.ROS217_10662(PF03567)(ER)
314264.ROS217_05754(PF00685)(mitochondrial)
314264.ROS217_02985(PF02630)ER
314264.ROS217_16110(PF08271)(mitochondrial)
314264.ROS217_03805(PF00685)mitochondrial; (mitochondrial)
314264.ROS217_03620(PF05990)(mitochondrial); (plastid)
314264.ROS217_10642(PF02630)ER
314264.ROS217_20557(PF16350) (PF01571) (PF08669)
314264.ROS217_10652(PF13704)mitochondrial
314264.ROS217_13536(PF16350) (PF01571) (PF08669)
314264.ROS217_22187(PF03209)ER
314264.ROS217_10922(PF13704)mitochondrial; (mitochondrial)
314264.ROS217_02205(PF16350) (PF01571) (PF08669)
314264.ROS217_16241(PF01571) (PF08669)
314264.ROS217_05944(PF01571) (PF08669)
314264.ROS217_22237(PF03209)(ER)
314264.ROS217_19022(PF01571) (PF08669)
314264.ROS217_15705(PF00549) (PF08442)
314264.ROS217_06444(PF02630)(plastid)
314264.ROS217_18947(PF01571) (PF08669)
314264.ROS217_03800(PF00685)(mitochondrial)
314264.ROS217_00050(PF13871) (PF13872)
314264.ROS217_02380(PF02630)(ER)
314264.ROS217_16316(PF01571) (PF08669)
314264.ROS217_10657(PF02485)plastid
314264.ROS217_15755(PF00549)plastid
314264.ROS217_06925(PF00549) (PF08442)
314264.ROS217_15760(PF00549) (PF08442)
314264.ROS217_15775(PF00549) (PF08442)
314264.ROS217_22967(PF01571) (PF08669)
314264.ROS217_17142(PF01571) (PF08669)
314264.ROS217_18987(PF01571) (PF08669)
314264.ROS217_01645(PF13871) (PF13872)
314264.ROS217_17582(PF12973)(ER)
314264.ROS217_20312(PF13936)
314264.ROS217_08574(PF03567)
314264.ROS217_01045(PF02195)
314264.ROS217_19967(PF02195)
314264.ROS217_02670(PF02195)
314264.ROS217_11576(PF13704)
314264.ROS217_11571(PF13704)
314264.ROS217_16730(PF13936)
314264.ROS217_01680(PF02195)
314264.ROS217_23227(PF02195)
314264.ROS217_02715(PF13871)not used
314264.ROS217_21212(PF13704)
314264.ROS217_19002(PF11927)
314264.ROS217_13146(PF12973)
314264.ROS217_13096(PF05990)
314264.ROS217_23950(PF02195)
314264.ROS217_21177(PF14532)
314264.ROS217_19812(PF02195)
314264.ROS217_09045(PF03092)
314264.ROS217_20162(PF00685)
314264.ROS217_23182(PF13936)
314264.ROS217_00935(PF01498)
314264.ROS217_01400(PF13936)
314264.ROS217_12356(PF09585)
314264.ROS217_12351(PF09585)
314264.ROS217_17527(PF04115)
314264.ROS217_12836(PF14532)
314264.ROS217_09727(PF02195)
314264.ROS217_20157(PF06258)
314264.ROS217_18072(PF11927)
314264.ROS217_10317(PF03567)
314264.ROS217_00895(PF12973)
314264.ROS217_14896(PF13936)
314264.ROS217_15970(PF04115)
314264.ROS217_15765(PF00549)
314264.ROS217_02710(PF13872)
314264.ROS217_03530(PF02195)
314264.ROS217_20137(PF06258)
314264.ROS217_20132(PF00685)
314264.ROS217_06930(PF00549)
314264.ROS217_04874(PF01786)
314264.ROS217_17030(PF05990)
314264.ROS217_20102(PF06258)
314264.ROS217_20457(PF14532)
314264.ROS217_00215(PF13455)
314264.ROS217_10322(PF02485)
314264.ROS217_01035(PF02195)
314264.ROS217_20062(PF12973)
314264.ROS217_01910(PF02195)
314264.ROS217_14336(PF09458)
314264.ROS217_07984(PF14532)
314264.ROS217_02445(PF13936)
314264.ROS217_09932(PF04115)
314264.ROS217_01900(PF02195)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================