Metamenu

Effective results for Pelagibaca bermudensis HTCC2601 (eggnog40)

Summary

Number of putative secreted proteins: 121
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 121 proteins (2 high, 119 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314265.R2601_02513(PF01794)ER
314265.R2601_01095(PF03480)mitochondrial
314265.R2601_23615(PF03480)ER; (ER)
314265.R2601_01270(PF03480)ER; (ER)
314265.R2601_06123(PF03480)(ER)
314265.R2601_13164(PF03480)ER
314265.R2601_23133(PF03480)ER
314265.R2601_15672(PF00394)(ER)
314265.R2601_13314(PF03480)ER
314265.R2601_20606(PF03480)(ER)
314265.R2601_03828(PF03480)ER
314265.R2601_01913(PF03480)ER
314265.R2601_20351(PF03480)(ER)
314265.R2601_24859(PF13778)(ER)
314265.R2601_19554(PF13778)ER
314265.R2601_00085(PF03480)(mitochondrial)
314265.R2601_06038(PF03480)ER
314265.R2601_07678(PF03480)ER
314265.R2601_25416(PF03480)ER
314265.R2601_05353(PF03480)ER
314265.R2601_09138(PF03480)ER
314265.R2601_26651(PF03480)ER
314265.R2601_00875(PF03480)ER
314265.R2601_01000(PF03480)ER
314265.R2601_21632(PF03480)mitochondrial; (mitochondrial)
314265.R2601_22227(PF03480)ER
314265.R2601_15767(PF01794)ER
314265.R2601_00030(PF03480)ER
314265.R2601_05313(PF03480)mitochondrial; (mitochondrial)
314265.R2601_01220(PF03480)(ER)
314265.R2601_07328(PF00394)ER
314265.R2601_00590(PF03480)ER
314265.R2601_03268(PF03480)ER
314265.R2601_19929(PF03480)ER
314265.R2601_14085PF10712ER
314265.R2601_01738(PF03480)ER; (ER)
314265.R2601_07563(PF13871)(mitochondrial)
314265.R2601_07053(PF00394)(ER)
314265.R2601_12206(PF10013)(mitochondrial); not used
314265.R2601_20586(PF02788) (PF00016)
314265.R2601_26991(PF13704)(ER)
314265.R2601_00095(PF01968) (PF05378)
314265.R2601_21962(PF01968) (PF05378)
314265.R2601_15532(PF02485)plastid
314265.R2601_01115(PF02788) (PF00016)
314265.R2601_00070(PF01968) (PF05378)
314265.R2601_01923(PF01968) (PF05378)
314265.R2601_23178(PF01968) (PF05378)
314265.R2601_02208(PF03480)(ER)
314265.R2601_06268(PF03480)plastid
314265.R2601_02093(PF01968) (PF05378)
314265.R2601_09168(PF01968) (PF05378)
314265.R2601_17389(PF00016) (PF02788)
314265.R2601_02088(PF02538)(mitochondrial)
314265.R2601_06633(PF08022) (PF01794)
314265.R2601_22397(PF14532) (PF03480)
314265.R2601_05223(PF03480)(mitochondrial)
314265.R2601_11039(PF08022) (PF01794)
314265.R2601_03393(PF03480)
314265.R2601_22257(PF00162)
314265.R2601_15915(PF02371)
314265.R2601_16790(PF02371)
314265.R2601_20249(PF07930)
314265.R2601_26986(PF13704)
314265.R2601_25981(PF13704)
314265.R2601_01443(PF02371)
314265.R2601_22571(PF09996)not used
314265.R2601_01918(PF02538)
314265.R2601_00090(PF02538)
314265.R2601_19794(PF01695)
314265.R2601_01458(PF02371)
314265.R2601_21391(PF02371)
314265.R2601_21967(PF02538)
314265.R2601_15537(PF13704)
314265.R2601_01908(PF03480)not used
314265.R2601_13960(PF09458)
314265.R2601_13794(PF01695)
314265.R2601_07278(PF01695)not used
314265.R2601_12513(PF02371)
314265.R2601_06933(PF01695)
314265.R2601_21432(PF14532)
314265.R2601_25646(PF13704)
314265.R2601_00065(PF02538)
314265.R2601_23313(PF02371)
314265.R2601_23173(PF02538)
314265.R2601_25651(PF03407)
314265.R2601_06308(PF02371)not used
314265.R2601_07098(PF00394)
314265.R2601_26256(PF14532)
314265.R2601_13614(PF02485)
314265.R2601_17439(PF03480)
314265.R2601_06323(PF13872)
314265.R2601_15812(PF01695)
314265.R2601_22562(PF09996)not used
314265.R2601_25971(PF13704)
314265.R2601_10809(PF03407)
314265.R2601_06338(PF02371)
314265.R2601_15807(PF01695)
314265.R2601_19065(PF05292)
314265.R2601_10254(PF02371)
314265.R2601_09163(PF02538)
314265.R2601_13399(PF01633)
314265.R2601_15835(PF01695)
314265.R2601_25956(PF13704)
314265.R2601_07593(PF01695)
314265.R2601_17399(PF00162)
314265.R2601_06743(PF13872)
314265.R2601_06768(PF13871)
314265.R2601_24395(PF01695)not used
314265.R2601_20386(PF03480)
314265.R2601_20721(PF02371)
314265.R2601_07976(PF01633)
314265.R2601_21381(PF02371)
314265.R2601_19025(PF02371)
314265.R2601_04438PF00052
314265.R2601_05238(PF05292)
314265.R2601_06813(PF02371)
314265.R2601_07493(PF01695)not used
314265.R2601_06543(PF02371)
314265.R2601_07363(PF00394)
314265.R2601_27369(PF01695)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.125 (17/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================