Effective results for Nitrobacter hamburgensis X14 (eggnog40)

Summary

Number of putative secreted proteins: 211
- Predicted by T4SEpre: 106
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 129 proteins (71 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
323097.Nham_1628PF13565 (PF13358)mitochondrial
323097.Nham_1627PF13565 (PF13358)mitochondrial
323097.Nham_2447PF13565 (PF13358)mitochondrial
323097.Nham_3168PF13565 (PF13358)mitochondrial
323097.Nham_2888+(PF05239)ER
323097.Nham_3014+PF13565mitochondrial
323097.Nham_3871+(PF02735)(mitochondrial); mitochondrial
323097.Nham_0871PF13565 (PF13358)mitochondrial
323097.Nham_2516PF13565 (PF13358)mitochondrial
323097.Nham_2834PF13565 (PF13358)mitochondrial
323097.Nham_3895PF13565 (PF13358)mitochondrial
323097.Nham_0486+mitochondrial; (mitochondrial)
323097.Nham_3676+ER
323097.Nham_1539+(mitochondrial)
323097.Nham_3850(PF00386)ER
323097.Nham_0251(PF14295)(ER)
323097.Nham_0809PF13565 (PF13358)(plastid)
323097.Nham_3917(PF02735)(mitochondrial); mitochondrial
323097.Nham_1462+(mitochondrial)
323097.Nham_2437+(mitochondrial)
323097.Nham_2941PF12142(mitochondrial)
323097.Nham_0651(PF04442)ER
323097.Nham_3229+mitochondrial
323097.Nham_2760+(ER); (mitochondrial)
323097.Nham_3906(PF02735)mitochondrial
323097.Nham_3580(PF05239)(mitochondrial)
323097.Nham_0836+(ER)
323097.Nham_3935+(mitochondrial); mitochondrial
323097.Nham_1264PF13565(mitochondrial)
323097.Nham_2561+mitochondrial
323097.Nham_0772+ER; (mitochondrial)
323097.Nham_0355+(mitochondrial)
323097.Nham_0450(PF02735)(mitochondrial); mitochondrial
323097.Nham_3791+(mitochondrial)
323097.Nham_2686(PF00839)ER
323097.Nham_3065(PF01695)(mitochondrial)
323097.Nham_3201+(mitochondrial)
323097.Nham_1685+ER
323097.Nham_1133+ER
323097.Nham_0080+(mitochondrial)
323097.Nham_3642+mitochondrial
323097.Nham_0214+ER
323097.Nham_2237+ER
323097.Nham_2837PF13565(mitochondrial); (plastid)
323097.Nham_3075(PF01609)mitochondrial
323097.Nham_0418+mitochondrial; (plastid)
323097.Nham_0419(PF05239)ER
323097.Nham_1591(PF00565)ER
323097.Nham_2677+mitochondrial; (mitochondrial)
323097.Nham_3234+(mitochondrial)
323097.Nham_3982(PF01609)ER
323097.Nham_3622+ER
323097.Nham_1969(PF00565)ER
323097.Nham_1811+ER
323097.Nham_3735+mitochondrial
323097.Nham_3956(PF00565)ER
323097.Nham_0992+ER
323097.Nham_0604(PF00839)ER
323097.Nham_2864+ER
323097.Nham_3391PF05598 (PF01609)
323097.Nham_3140PF05598 (PF01609)
323097.Nham_2160PF05598 (PF01609)
323097.Nham_3290PF05598 (PF01609)
323097.Nham_1473PF05598 (PF01609)
323097.Nham_3113PF05598 (PF01609)
323097.Nham_3552PF05598 (PF01609)
323097.Nham_1266PF05598 (PF01609)
323097.Nham_2748PF05598 (PF01609)
323097.Nham_4022(PF00102)(plastid)
323097.Nham_1095PF05598 (PF01609)
323097.Nham_3654PF05598 (PF01609)
323097.Nham_3308(PF05239)(mitochondrial)
323097.Nham_1653PF05598 (PF01609)
323097.Nham_3414PF05598 (PF01609)
323097.Nham_0898(PF11523)(mitochondrial)
323097.Nham_1135PF05598 (PF01609)
323097.Nham_3853(PF05239)(mitochondrial)
323097.Nham_0259+(PF04442)
323097.Nham_1692(PF01609)plastid
323097.Nham_0965+(ER)
323097.Nham_3440PF05598 (PF01609)
323097.Nham_3459+(PF04442)
323097.Nham_0512PF05598 (PF01609)
323097.Nham_1821PF05598 (PF01609)
323097.Nham_3090(PF00565)(mitochondrial)
323097.Nham_0701PF05598 (PF01609)
323097.Nham_1498PF05598 (PF01609)
323097.Nham_2596PF05598 (PF01609)
323097.Nham_3715(PF01695)
323097.Nham_0571+
323097.Nham_1318(PF01442)
323097.Nham_1156(PF13358)
323097.Nham_0322(PF04098)
323097.Nham_0808PF02371
323097.Nham_3948+
323097.Nham_4013(PF13358)
323097.Nham_0035+
323097.Nham_1639+
323097.Nham_0725+
323097.Nham_1037+
323097.Nham_2934PF02371
323097.Nham_2150+
323097.Nham_1045+
323097.Nham_3289+
323097.Nham_0155+
323097.Nham_3826PF13565
323097.Nham_1463+
323097.Nham_1999PF02371
323097.Nham_2945+
323097.Nham_2361(PF05239)
323097.Nham_3769PF02371
323097.Nham_0834PF02371
323097.Nham_1188(PF13358)
323097.Nham_0900(PF01695)
323097.Nham_1056(PF01697)
323097.Nham_1152(PF05239)
323097.Nham_2955PF02371
323097.Nham_1876+
323097.Nham_2773PF02371
323097.Nham_2171(PF05239)
323097.Nham_3339+
323097.Nham_3931(PF05239)
323097.Nham_3939PF02371
323097.Nham_0132PF02371
323097.Nham_0910+
323097.Nham_3924(PF01695)
323097.Nham_0109PF02371
323097.Nham_3814(PF05239)
323097.Nham_1305+
323097.Nham_2406+
323097.Nham_2998(PF01609)
323097.Nham_3348+
323097.Nham_2759PF05598
323097.Nham_2758PF05598
323097.Nham_3007PF02371
323097.Nham_3794(PF05239)
323097.Nham_0208+
323097.Nham_3996PF02371
323097.Nham_1428(PF06662)
323097.Nham_0247PF05598
323097.Nham_0246(PF01609)
323097.Nham_2506(PF05239)
323097.Nham_2500(PF01609)
323097.Nham_1939PF02371
323097.Nham_3788(PF01609)
323097.Nham_1783+
323097.Nham_0788(PF01695)
323097.Nham_3447+
323097.Nham_3468+
323097.Nham_3465+
323097.Nham_3060PF02371
323097.Nham_3061(PF13358)
323097.Nham_3069+
323097.Nham_3682PF02371
323097.Nham_0319(PF01695)
323097.Nham_1138+
323097.Nham_0081+
323097.Nham_3641+
323097.Nham_2306PF02371
323097.Nham_2789PF13565
323097.Nham_2786(PF01695)
323097.Nham_2012+
323097.Nham_3073+
323097.Nham_3079PF02371
323097.Nham_0329+
323097.Nham_0748+
323097.Nham_1690PF05598
323097.Nham_1340+
323097.Nham_2003(PF13358)
323097.Nham_3049+
323097.Nham_0302+
323097.Nham_3994+
323097.Nham_3995PF02371
323097.Nham_3993+
323097.Nham_0531+
323097.Nham_1203(PF01695)
323097.Nham_1590+
323097.Nham_2499PF05598
323097.Nham_1373+
323097.Nham_1376PF05598
323097.Nham_1378PF02371
323097.Nham_3058PF02371
323097.Nham_3235+
323097.Nham_0509(PF00565)
323097.Nham_0506+
323097.Nham_1018+
323097.Nham_1568+
323097.Nham_1364+
323097.Nham_2245+
323097.Nham_1815+
323097.Nham_3913(PF01695)
323097.Nham_3085PF02371
323097.Nham_3083PF02371
323097.Nham_3889PF05598
323097.Nham_3955PF02371
323097.Nham_3980(PF05239)
323097.Nham_2470+
323097.Nham_1954PF02371
323097.Nham_1959PF02371
323097.Nham_2272PF02371
323097.Nham_2723+
323097.Nham_2910+
323097.Nham_0613+
323097.Nham_3437(PF13358)
323097.Nham_3943PF02371
323097.Nham_3898+
323097.Nham_0013PF05598
323097.Nham_0014(PF01609)
323097.Nham_0946+
323097.Nham_0943+
323097.Nham_2267PF04184

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================