Metamenu

Effective results for Sulfurimonas denitrificans DSM 1251 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 15 proteins (0 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
326298.Suden_1474(PF02516)ER
326298.Suden_1941(PF08376)ER
326298.Suden_0209(PF08376)ER
326298.Suden_0983(PF08376)ER
326298.Suden_0988(PF08376)ER
326298.Suden_0989(PF08376)ER
326298.Suden_1926(PF08376)ER
326298.Suden_0106(PF08376)ER
326298.Suden_0930(PF02112)
326298.Suden_1032(PF01142)
326298.Suden_1967(PF12513)
326298.Suden_1374(PF02943)
326298.Suden_1340(PF01142)
326298.Suden_0570(PF16114)
326298.Suden_0416(PF08376)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================