Effective results for Pseudoalteromonas haloplanktis TAC125 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
326442.PSHAa1016(PF13202) (PF00036)ER
326442.PSHAa0019(PF13202)ER
326442.PSHAa0018(PF13202)ER
326442.PSHAa1014(PF13202)ER
326442.PSHAa2684(PF09458)ER
326442.PSHAb0349(PF16187)ER
326442.PSHAa1340(PF13202)ER
326442.PSHAa1015(PF13202)ER
326442.PSHAa0017(PF13202)ER; (ER)
326442.PSHAa1920(PF09317)ER
326442.PSHAb0302(PF00883)(mitochondrial); (plastid)
326442.PSHAa0618(PF13202)ER
326442.PSHAa0617(PF13202)ER
326442.PSHAa0615(PF13202)ER
326442.PSHAa2194(PF13202)ER
326442.PSHAa1952(PF09317)ER
326442.PSHAa1307(PF06315)
326442.PSHAb0549(PF00316)
326442.PSHAb0374(PF09317)
326442.PSHAa2388(PF00883)
326442.PSHAa0463(PF00316)
326442.PSHAa0608(PF00883)
326442.PSHAa1671(PF02460)
326442.PSHAa1821(PF06315)
326442.PSHAa1484(PF00883)
326442.PSHAa0580(PF12576)
326442.PSHAa0972(PF16187)
326442.PSHAa2086PF04927not used
326442.PSHAa2423(PF00883)
326442.PSHAb0262(PF10354)
326442.PSHAb0133(PF13875)
326442.PSHAa1742(PF00316)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================