Metamenu

Effective results for Lachnoclostridium phytofermentans ISDg (eggnog40)

Summary

Number of putative secreted proteins: 214
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 59 eukaryotic-like domains, contained in 214 proteins (11 high, 203 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
357809.Cphy_2128(PF16990) PF03442ER
357809.Cphy_1318(PF01554)ER
357809.Cphy_1775(PF13290)ER; (ER)
357809.Cphy_3862(PF00331)ER
357809.Cphy_3510(PF02368)ER
357809.Cphy_0966(PF12646)(mitochondrial)
357809.Cphy_1160(PF00488)ER
357809.Cphy_1344(PF16472)ER
357809.Cphy_1290(PF12698)mitochondrial
357809.Cphy_3509(PF02368)ER
357809.Cphy_3475(PF02368)ER
357809.Cphy_0750PF05698ER
357809.Cphy_2500(PF02368)ER
357809.Cphy_2596(PF02368)ER
357809.Cphy_3264(PF02368)ER
357809.Cphy_3064(PF02368)ER
357809.Cphy_1800(PF13290)ER
357809.Cphy_3310(PF00295)ER
357809.Cphy_3089(PF06541)ER
357809.Cphy_3217(PF00295)(mitochondrial)
357809.Cphy_2108(PF00331)ER
357809.Cphy_1252(PF01554)ER
357809.Cphy_3076(PF00137)ER; (ER)
357809.Cphy_0204PF05698ER
357809.Cphy_2207PF05698ER
357809.Cphy_1799(PF13290)ER
357809.Cphy_2064(PF00488)ER
357809.Cphy_1853(PF11070)ER
357809.Cphy_2899(PF12698)(mitochondrial)
357809.Cphy_2276(PF16990)ER
357809.Cphy_3430(PF02368)ER
357809.Cphy_2618(PF02368)ER
357809.Cphy_1063(PF02368)ER
357809.Cphy_1510(PF00331)ER; (ER)
357809.Cphy_0492(PF02368)ER
357809.Cphy_0078(PF12698)(mitochondrial)
357809.Cphy_0077(PF12698)mitochondrial
357809.Cphy_1071(PF16990)ER
357809.Cphy_3230(PF02368)ER
357809.Cphy_3698(PF02368)ER
357809.Cphy_2746(PF16472)ER
357809.Cphy_1223(PF12698)mitochondrial
357809.Cphy_1224(PF12698)(mitochondrial); mitochondrial
357809.Cphy_2404(PF01554)(mitochondrial)
357809.Cphy_3202PF03442ER
357809.Cphy_3201(PF06541)ER
357809.Cphy_3576(PF12698)mitochondrial
357809.Cphy_1058(PF12698)(mitochondrial)
357809.Cphy_1052(PF06541)ER
357809.Cphy_3367PF03442ER
357809.Cphy_3368PF03442ER
357809.Cphy_2998(PF00689)mitochondrial; (mitochondrial)
357809.Cphy_0609(PF12698)ER
357809.Cphy_1420(PF10662)mitochondrial
357809.Cphy_1889(PF02368)ER
357809.Cphy_2168(PF14526)(ER)
357809.Cphy_2013(PF00079)ER
357809.Cphy_2014(PF00079)ER
357809.Cphy_3388(PF02368)(mitochondrial)
357809.Cphy_2383(PF00488)ER
357809.Cphy_0624(PF00331)ER
357809.Cphy_0622(PF00488)(mitochondrial)
357809.Cphy_1157(PF02368)ER
357809.Cphy_1714(PF03644)ER
357809.Cphy_3715(PF06541)(ER)
357809.Cphy_3445(PF00137)ER
357809.Cphy_0087(PF02906) (PF02256)
357809.Cphy_2056(PF02906) (PF02256)
357809.Cphy_1750(PF07470)(mitochondrial)
357809.Cphy_2132(PF00689) (PF00690)
357809.Cphy_1804(PF00689) (PF00690)
357809.Cphy_3314(PF03636) (PF03632)
357809.Cphy_2215(PF07931)(mitochondrial)
357809.Cphy_1929(PF17167) (PF06165)
357809.Cphy_3077(PF01496)(mitochondrial)
357809.Cphy_3072(PF02874) (PF16886)
357809.Cphy_1019(PF03636) (PF03632)
357809.Cphy_1874(PF03636) (PF03632)
357809.Cphy_3688(PF00689) (PF00690)
357809.Cphy_3805(PF02906) (PF02256)
357809.Cphy_3597(PF12698)(mitochondrial)
357809.Cphy_2503(PF07931)(mitochondrial)
357809.Cphy_0632(PF00689) (PF00690)
357809.Cphy_2942(PF00690)(mitochondrial)
357809.Cphy_3313(PF03636) (PF03632)
357809.Cphy_1975(PF02368)(mitochondrial)
357809.Cphy_3442(PF02874) (PF16886)
357809.Cphy_0430(PF17167) (PF06165)
357809.Cphy_2648(PF10662)(mitochondrial)
357809.Cphy_2920(PF13020)(ER)
357809.Cphy_3854(PF17167) (PF06165)
357809.Cphy_2039(PF14526)
357809.Cphy_3452(PF01554)
357809.Cphy_0883(PF01554)
357809.Cphy_0776(PF07470)
357809.Cphy_0081(PF02915)
357809.Cphy_1724(PF01554)
357809.Cphy_2809PF01576
357809.Cphy_0175(PF06100)
357809.Cphy_0376PF05698
357809.Cphy_1592(PF06100)
357809.Cphy_1593(PF01554)
357809.Cphy_2556(PF14526)
357809.Cphy_2737(PF07470)
357809.Cphy_2736(PF00295)
357809.Cphy_3738(PF02874)
357809.Cphy_3736(PF02874)
357809.Cphy_1919(PF07470)
357809.Cphy_3286(PF01610)
357809.Cphy_3049(PF14526)
357809.Cphy_0565(PF01610)
357809.Cphy_0987(PF01880)
357809.Cphy_2912(PF01880)
357809.Cphy_1116(PF01554)
357809.Cphy_1802(PF00689)
357809.Cphy_3319(PF01554)
357809.Cphy_0694(PF17167)
357809.Cphy_0322(PF07892)
357809.Cphy_2107(PF14526)
357809.Cphy_3276(PF01554)
357809.Cphy_3075(PF01991)
357809.Cphy_3074(PF01992)
357809.Cphy_3071(PF02874)
357809.Cphy_3070(PF01813)
357809.Cphy_3073(PF01990)
357809.Cphy_1810(PF01554)
357809.Cphy_3099(PF13127)
357809.Cphy_0203(PF07470)
357809.Cphy_1135(PF08123)
357809.Cphy_1314(PF01610)
357809.Cphy_2445(PF01610)
357809.Cphy_1797(PF02915)
357809.Cphy_3798(PF02906)
357809.Cphy_2060(PF01554)
357809.Cphy_2063(PF12698)
357809.Cphy_0524(PF02915)
357809.Cphy_2898(PF12698)
357809.Cphy_1305(PF12746)
357809.Cphy_2479(PF01795)
357809.Cphy_1271PF16015
357809.Cphy_3255(PF14512)
357809.Cphy_2780(PF02915)
357809.Cphy_3433(PF01610)
357809.Cphy_0824(PF06541)
357809.Cphy_2869(PF01554)
357809.Cphy_0649(PF01610)
357809.Cphy_1067(PF01554)
357809.Cphy_2460(PF01554)
357809.Cphy_0670(PF16011)
357809.Cphy_1472(PF14526)
357809.Cphy_1218(PF00488)
357809.Cphy_1215(PF07247)
357809.Cphy_2328(PF01610)
357809.Cphy_2634(PF06249)
357809.Cphy_3233(PF12746)
357809.Cphy_3121(PF02915)
357809.Cphy_0489(PF16889)
357809.Cphy_0488(PF16332)
357809.Cphy_0115(PF12698)
357809.Cphy_3204(PF12746)
357809.Cphy_1924(PF01880)
357809.Cphy_0274(PF01795)
357809.Cphy_0879(PF01416)
357809.Cphy_0126(PF01416)
357809.Cphy_1188(PF09295)
357809.Cphy_1059(PF12698)
357809.Cphy_3816(PF02915)
357809.Cphy_3741(PF00137)
357809.Cphy_2766(PF01554)
357809.Cphy_0918(PF01610)
357809.Cphy_0608(PF01610)
357809.Cphy_0284PF05698
357809.Cphy_0288(PF07470)
357809.Cphy_1426(PF06249)
357809.Cphy_2428(PF02368)
357809.Cphy_2196(PF14311)
357809.Cphy_3173(PF01554)
357809.Cphy_3392(PF07892)
357809.Cphy_0857(PF17167)
357809.Cphy_1438(PF01610)
357809.Cphy_2567(PF00295)
357809.Cphy_3762(PF01554)
357809.Cphy_3019(PF01554)
357809.Cphy_3010(PF00331)
357809.Cphy_2381(PF00488)
357809.Cphy_0934(PF07470)
357809.Cphy_0153(PF00488)
357809.Cphy_1155(PF02368)
357809.Cphy_1711(PF00295)
357809.Cphy_2714(PF02874)
357809.Cphy_3626(PF07931)
357809.Cphy_3029(PF07470)
357809.Cphy_3022(PF16889)
357809.Cphy_3440(PF01813)
357809.Cphy_3441(PF02874)
357809.Cphy_3444(PF01990)
357809.Cphy_3446(PF01496)
357809.Cphy_3447(PF01992)
357809.Cphy_0543(PF00690)
357809.Cphy_0545(PF04432)
357809.Cphy_0546(PF04432)
357809.Cphy_0381(PF01554)
357809.Cphy_0092(PF02906)
357809.Cphy_0090(PF02906)
357809.Cphy_2815(PF02915)
357809.Cphy_0165(PF14526)
357809.Cphy_2921(PF13020)
357809.Cphy_1141(PF14249)
357809.Cphy_3634(PF01416)
357809.Cphy_3856(PF01610)
357809.Cphy_1360(PF14512)
357809.Cphy_2145(PF14526)
357809.Cphy_1566(PF00690)
357809.Cphy_3142(PF14526)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================