Effective results for Escherichia coli 536 (eggnog40)

Summary

Number of putative secreted proteins: 237
- Predicted by T4SEpre: 101
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 146 proteins (0 high, 146 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
362663.ECP_4278(PF02629) (PF00549)(mitochondrial)
362663.ECP_4164(PF02901) (PF01228)(mitochondrial)
362663.ECP_4036(PF02629) (PF00549)(mitochondrial)
362663.ECP_4550(PF00665)(mitochondrial)
362663.ECP_2557+(ER)
362663.ECP_3909(PF03222)(ER)
362663.ECP_4052+ER
362663.ECP_0751+ER
362663.ECP_2989(PF00665)(mitochondrial); (plastid)
362663.ECP_2508+ER
362663.ECP_3834(PF00665)(mitochondrial)
362663.ECP_0581(PF00696)(mitochondrial)
362663.ECP_1988+ER
362663.ECP_3127+ER
362663.ECP_2995(PF02796) (PF00665)(plastid)
362663.ECP_0298+ER
362663.ECP_0224+(mitochondrial)
362663.ECP_0822+ER
362663.ECP_2453+ER
362663.ECP_4682+ER
362663.ECP_3812(PF00345)ER
362663.ECP_3813(PF00345)(mitochondrial); mitochondrial
362663.ECP_3814(PF00577)ER
362663.ECP_3815(PF00345)ER
362663.ECP_0149(PF00577)(ER)
362663.ECP_1548+ER
362663.ECP_2148(PF00345)ER
362663.ECP_2147(PF00577)ER
362663.ECP_4652(PF00577)(mitochondrial)
362663.ECP_0555+ER
362663.ECP_0150(PF00345)mitochondrial; (mitochondrial)
362663.ECP_2025(PF02796) (PF00665)(plastid)
362663.ECP_3171(PF01204)ER
362663.ECP_3774(PF02796) (PF00665)(plastid)
362663.ECP_2544(PF00665)(mitochondrial)
362663.ECP_2788+mitochondrial; (mitochondrial)
362663.ECP_2817+ER
362663.ECP_0413(PF00665)(mitochondrial)
362663.ECP_3783(PF00577)ER
362663.ECP_1453+(mitochondrial)
362663.ECP_3784(PF00345)ER
362663.ECP_3541+ER
362663.ECP_1211(PF13436)(ER)
362663.ECP_3806(PF00665)(mitochondrial); (plastid)
362663.ECP_3768+mitochondrial; (mitochondrial)
362663.ECP_1850(PF03222)ER; (ER)
362663.ECP_0315+ER
362663.ECP_1134(PF02796) (PF00665)(plastid)
362663.ECP_1683+ER; (ER)
362663.ECP_3673+ER
362663.ECP_2560+ER
362663.ECP_4538(PF00345)ER
362663.ECP_3698(PF08125) (PF01232)(mitochondrial)
362663.ECP_3189(PF00345)ER
362663.ECP_0985(PF00328)ER
362663.ECP_2970(PF00577)(mitochondrial)
362663.ECP_2593(PF00665)(mitochondrial)
362663.ECP_4617(PF02796) (PF00665)(plastid)
362663.ECP_2496+ER
362663.ECP_2375(PF00345)ER
362663.ECP_3519(PF00577)(mitochondrial)
362663.ECP_3516(PF00345)ER
362663.ECP_1245(PF01204)ER
362663.ECP_3423(PF02796) (PF00665)(plastid)
362663.ECP_0998(PF00665)(mitochondrial)
362663.ECP_4420+ER
362663.ECP_4608+ER
362663.ECP_0295(PF00345)ER
362663.ECP_3249(PF03222)(ER); ER
362663.ECP_4565(PF00665)mitochondrial
362663.ECP_0286+(mitochondrial)
362663.ECP_1001(PF00328)ER
362663.ECP_3535+mitochondrial; (mitochondrial)
362663.ECP_2134(PF01116)(mitochondrial)
362663.ECP_1079+(mitochondrial); (plastid)
362663.ECP_0276(PF02796) (PF00665)(plastid)
362663.ECP_3419+ER
362663.ECP_2216+(ER); ER
362663.ECP_3841(PF02796) (PF00665)(plastid)
362663.ECP_3262+ER
362663.ECP_3280+ER
362663.ECP_0002(PF00696)(mitochondrial); mitochondrial
362663.ECP_2707(PF02796) (PF00665)(plastid)
362663.ECP_2706(PF00665)(mitochondrial); (plastid)
362663.ECP_4553+(ER)
362663.ECP_1505(PF08125) (PF01232)
362663.ECP_1833+(mitochondrial)
362663.ECP_2409(PF05524)(mitochondrial)
362663.ECP_3100(PF08125) (PF01232)
362663.ECP_3829+(ER)
362663.ECP_0246+(ER)
362663.ECP_2473(PF10662)(mitochondrial)
362663.ECP_3836+plastid
362663.ECP_0836(PF02901) (PF01228)
362663.ECP_0740(PF02629) (PF00549)
362663.ECP_0578(PF02629) (PF00549)
362663.ECP_0914(PF02901) (PF01228)
362663.ECP_2858(PF03222)(ER)
362663.ECP_2213(PF08125) (PF01232)
362663.ECP_4659(PF08125) (PF01232)
362663.ECP_3772(PF00665)(ER)
362663.ECP_2959(PF03711) (PF01276)
362663.ECP_3207(PF02901) (PF01228)
362663.ECP_3757(PF01116)(mitochondrial)
362663.ECP_4539(PF00577)(mitochondrial)
362663.ECP_0327(PF03711) (PF01276)
362663.ECP_4620(PF00665)(plastid)
362663.ECP_2632+(mitochondrial)
362663.ECP_0194(PF03711) (PF01276)
362663.ECP_2376(PF00577)(ER)
362663.ECP_3347(PF01116)(mitochondrial)
362663.ECP_4600(PF02901) (PF01228)
362663.ECP_4360(PF03711) (PF01276)
362663.ECP_0283(PF00665)(mitochondrial)
362663.ECP_0711(PF03711) (PF01276)
362663.ECP_4375(PF03711) (PF01276)
362663.ECP_3385+(mitochondrial)
362663.ECP_1526(PF08125) (PF01232)
362663.ECP_3672+(mitochondrial)
362663.ECP_0397(PF02629) (PF00549)
362663.ECP_0399+(PF00696)
362663.ECP_3218+
362663.ECP_3073(PF03738)
362663.ECP_1298+
362663.ECP_1721(PF01116)
362663.ECP_0109+
362663.ECP_3472+
362663.ECP_0815(PF02615)
362663.ECP_2073+
362663.ECP_3619(PF01204)
362663.ECP_3102(PF02615)
362663.ECP_2884+
362663.ECP_4120+
362663.ECP_0240+
362663.ECP_0803+
362663.ECP_3209(PF03222)
362663.ECP_2065+
362663.ECP_3837(PF00665)
362663.ECP_0587+
362663.ECP_0567+
362663.ECP_2050(PF10662)
362663.ECP_3129(PF03738)
362663.ECP_0037+
362663.ECP_2996(PF01695)
362663.ECP_2868(PF00696)
362663.ECP_4692(PF01695)
362663.ECP_1942+
362663.ECP_4109+
362663.ECP_2609+
362663.ECP_4076+
362663.ECP_0351+
362663.ECP_4676+
362663.ECP_1080+
362663.ECP_0577(PF02615)
362663.ECP_2260+
362663.ECP_1775+
362663.ECP_0179(PF00696)
362663.ECP_3158+
362663.ECP_2856+
362663.ECP_1099+
362663.ECP_2038+
362663.ECP_1231+
362663.ECP_2440(PF05524)
362663.ECP_2842(PF05524)
362663.ECP_4277(PF00549)
362663.ECP_4006+
362663.ECP_3330+
362663.ECP_4301+
362663.ECP_4651(PF00345)
362663.ECP_2024(PF01695)
362663.ECP_2159+
362663.ECP_3270+
362663.ECP_3773(PF01695)
362663.ECP_3771(PF13518)
362663.ECP_2543(PF13518)
362663.ECP_2830(PF00696)
362663.ECP_1936+
362663.ECP_3932+
362663.ECP_4311(PF13518)
362663.ECP_4312(PF00665)
362663.ECP_1145+
362663.ECP_0414(PF13518)
362663.ECP_2828+
362663.ECP_1926+
362663.ECP_4523+
362663.ECP_0318(PF00665)
362663.ECP_0319(PF01695)
362663.ECP_0538+
362663.ECP_1133(PF01695)
362663.ECP_0322+
362663.ECP_0173+
362663.ECP_0954+
362663.ECP_3756(PF01116)
362663.ECP_2969(PF00345)
362663.ECP_4242(PF00696)
362663.ECP_2581(PF01228)
362663.ECP_3564(PF13518)
362663.ECP_3563(PF00665)
362663.ECP_4431(PF03738)
362663.ECP_4430+
362663.ECP_3229(PF01116)
362663.ECP_2594(PF13518)
362663.ECP_4616(PF01695)
362663.ECP_4611(PF00665)
362663.ECP_0426+
362663.ECP_1246(PF05524)
362663.ECP_3424(PF01695)
362663.ECP_3421+
362663.ECP_2600+
362663.ECP_0997(PF13518)
362663.ECP_3640(PF03222)
362663.ECP_4280(PF02615)
362663.ECP_0296(PF00577)
362663.ECP_3505(PF05189)
362663.ECP_1499(PF00577)
362663.ECP_3724(PF01501)
362663.ECP_3725(PF06176)
362663.ECP_3726(PF01501)
362663.ECP_3727(PF01501)
362663.ECP_2914(PF01116)
362663.ECP_1959+
362663.ECP_4161(PF05524)
362663.ECP_4419+
362663.ECP_0066+
362663.ECP_4172(PF00696)
362663.ECP_0277(PF01695)
362663.ECP_0271(PF00696)
362663.ECP_3520(PF00345)
362663.ECP_1606+
362663.ECP_3670+
362663.ECP_3679(PF02615)
362663.ECP_4149(PF00696)
362663.ECP_4499(PF00696)
362663.ECP_3842(PF01695)
362663.ECP_4034(PF00696)
362663.ECP_0739(PF00549)
362663.ECP_2703(PF01695)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.125 (17/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================