Effective results for Rhodobacterales bacterium HTCC2255 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 37 proteins (0 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
367336.OM2255_09221				(PF16350) (PF01571) (PF08669)	(ER)
367336.OM2255_07330				(PF16350) (PF01571) (PF08669)	ER; (ER)
367336.OM2255_07720				(PF01571) (PF08669)	mitochondrial
367336.OM2255_11640				(PF16350) (PF01571) (PF08669)	(mitochondrial)
367336.OM2255_10970				(PF16350) (PF01571) (PF08669)	(ER)
367336.OM2255_08636				(PF16350) (PF01571) (PF08669)
367336.OM2255_08621				(PF16350) (PF01571) (PF08669)
367336.OM2255_12617				(PF01571) (PF08669)
367336.OM2255_06295				(PF01571) (PF08669)
367336.OM2255_04575				(PF03948) (PF01281)
367336.OM2255_04050				(PF01571) (PF08669)
367336.OM2255_06955				(PF01571) (PF08669)
367336.OM2255_00257				(PF03948) (PF01281)
367336.OM2255_06410				(PF01571) (PF08669)
367336.OM2255_00367				(PF02844) (PF02843)
367336.OM2255_07000				(PF01571) (PF08669)
367336.OM2255_13519				(PF02844) (PF02843)
367336.OM2255_11290				(PF01571) (PF08669)
367336.OM2255_00202				(PF01715)
367336.OM2255_03680				(PF01715)
367336.OM2255_11550				(PF13344)
367336.OM2255_03357				(PF11927)
367336.OM2255_04565				(PF01250)
367336.OM2255_05025				(PF13344)
367336.OM2255_05850				(PF13344)
367336.OM2255_08651				(PF09585)
367336.OM2255_06940				(PF11927)
367336.OM2255_00267				(PF01250)
367336.OM2255_08646				(PF09585)
367336.OM2255_03940				(PF10013)	not used
367336.OM2255_04580				(PF09996)
367336.OM2255_05055				(PF13344)
367336.OM2255_06740				(PF13344)
367336.OM2255_09146				(PF02367)
367336.OM2255_00162				(PF09996)
367336.OM2255_09951				(PF05153)
367336.OM2255_00217				(PF02367)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================