Effective results for Salinispora tropica CNB-440 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 51 proteins (1 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
369723.Strop_0208(PF05977)(ER); (plastid)
369723.Strop_0204(PF00891)ER
369723.Strop_0418(PF05977)mitochondrial
369723.Strop_2303(PF05977)mitochondrial; (mitochondrial)
369723.Strop_4415(PF05977)(ER)
369723.Strop_2001(PF00686)mitochondrial
369723.Strop_2565(PF01066)ER
369723.Strop_2815(PF00891)mitochondrial; (mitochondrial)
369723.Strop_1585(PF00415)mitochondrial; (mitochondrial)
369723.Strop_1397(PF01066)(mitochondrial)
369723.Strop_3896(PF00163)(mitochondrial)
369723.Strop_4023(PF05977)ER; (ER)
369723.Strop_2409(PF05977)(mitochondrial)
369723.Strop_4230(PF01066)mitochondrial; (mitochondrial)
369723.Strop_1190(PF03644)ER
369723.Strop_0347(PF05977)mitochondrial
369723.Strop_2052(PF16387)ER
369723.Strop_1179(PF00415)(ER)
369723.Strop_1786(PF01066)(mitochondrial)
369723.Strop_2483(PF05977)(ER)
369723.Strop_3249(PF01066)(mitochondrial)
369723.Strop_3829(PF01066)(mitochondrial)
369723.Strop_1979(PF00415)(mitochondrial)
369723.Strop_1176(PF00415)(mitochondrial)
369723.Strop_2214(PF00891)
369723.Strop_3144(PF11338)
369723.Strop_2157(PF11338)
369723.Strop_2943(PF12740)
369723.Strop_0520(PF02945)
369723.Strop_4414(PF00891)
369723.Strop_2969(PF12740)
369723.Strop_0433(PF01066)
369723.Strop_0425(PF05977)
369723.Strop_2349(PF00415)
369723.Strop_4565(PF00415)
369723.Strop_4165(PF05977)
369723.Strop_2928(PF01066)
369723.Strop_1441(PF01847)
369723.Strop_0656(PF05977)
369723.Strop_2387(PF01066)
369723.Strop_0483(PF00648)
369723.Strop_4489(PF01066)
369723.Strop_2830(PF00891)
369723.Strop_2072(PF05977)
369723.Strop_1193(PF00415)
369723.Strop_2064(PF00755)
369723.Strop_0344PF08213not used
369723.Strop_0831(PF01789)
369723.Strop_2195(PF00891)
369723.Strop_2686(PF00686)
369723.Strop_4369(PF00163)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================