Effective results for Teredinibacter turnerae T7901 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 87 proteins (14 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
377629.TERTU_3387(PF03422) (PF00553)ER
377629.TERTU_4019(PF00759) (PF00553)ER
377629.TERTU_4225(PF00553) (PF03664)(ER); ER
377629.TERTU_2894(PF00150) (PF00553)mitochondrial
377629.TERTU_0645(PF00759) (PF00553)mitochondrial
377629.TERTU_2321(PF03422) (PF00553)mitochondrial
377629.TERTU_2684(PF03422) (PF00553)ER
377629.TERTU_2546(PF00331) (PF00553)(mitochondrial); plastid
377629.TERTU_2314(PF03422) (PF00553)(mitochondrial)
377629.TERTU_4085(PF00150) (PF03422)ER
377629.TERTU_3361(PF00150) (PF00553)ER
377629.TERTU_3565(PF00150) (PF00553)(mitochondrial)
377629.TERTU_1599(PF00331) (PF03422)ER
377629.TERTU_0428(PF00150) PF00457mitochondrial
377629.TERTU_3400PF02015 (PF00553)ER
377629.TERTU_3416(PF06468)ER
377629.TERTU_3398(PF00331)ER
377629.TERTU_4541(PF00553)ER
377629.TERTU_0513(PF00331)ER
377629.TERTU_0607(PF00759)ER; (ER)
377629.TERTU_0047(PF00553)ER
377629.TERTU_2703(PF00553)(ER)
377629.TERTU_4242(PF14295)ER
377629.TERTU_2893(PF00759)ER
377629.TERTU_0835(PF00331)mitochondrial
377629.TERTU_3603(PF00331)mitochondrial
377629.TERTU_0736(PF00331)(mitochondrial)
377629.TERTU_2699(PF00553)(ER); ER
377629.TERTU_3102(PF06468)ER
377629.TERTU_3101(PF06468)ER
377629.TERTU_2211(PF00553)ER
377629.TERTU_0031PF04922ER
377629.TERTU_4303(PF16403)ER
377629.TERTU_3487(PF03662)mitochondrial
377629.TERTU_4312(PF16403)ER; (ER)
377629.TERTU_0767PF02015ER
377629.TERTU_0782(PF00759)ER
377629.TERTU_4676(PF00331)ER
377629.TERTU_4415(PF00150)ER
377629.TERTU_0775(PF07678)ER
377629.TERTU_3803(PF00553)(mitochondrial)
377629.TERTU_2311(PF00553)ER
377629.TERTU_3450PF16184ER
377629.TERTU_4083(PF03422)ER
377629.TERTU_0310PF16184(ER)
377629.TERTU_2022(PF09295)ER
377629.TERTU_0149(PF00553)(ER); (mitochondrial)
377629.TERTU_3775(PF15071)ER
377629.TERTU_3356(PF00553)mitochondrial; (mitochondrial)
377629.TERTU_4345(PF00759)ER
377629.TERTU_4344(PF00150)mitochondrial; (mitochondrial)
377629.TERTU_1681PF00457ER
377629.TERTU_1680PF00457(ER)
377629.TERTU_3514(PF11721)ER
377629.TERTU_0155(PF01419)ER
377629.TERTU_3690(PF00150)ER
377629.TERTU_3347(PF00553)mitochondrial
377629.TERTU_3349(PF00331)ER
377629.TERTU_0427(PF00150)ER
377629.TERTU_2343PF12349mitochondrial; (mitochondrial)
377629.TERTU_3987(PF00553)ER
377629.TERTU_3505PF16184(ER)
377629.TERTU_3751(PF00150)ER
377629.TERTU_0183(PF00150)ER
377629.TERTU_1485(PF03422)ER
377629.TERTU_1678PF00457(ER)
377629.TERTU_4238(PF03664)(mitochondrial)
377629.TERTU_3447(PF11721) PF00457
377629.TERTU_2895(PF00150)plastid
377629.TERTU_2320(PF03422) (PF00553)
377629.TERTU_4311(PF16403)(ER)
377629.TERTU_2762(PF06165) (PF17167)
377629.TERTU_2767(PF06165) (PF17167)
377629.TERTU_0851(PF06165) (PF17167)
377629.TERTU_1675(PF03422)(ER)
377629.TERTU_2280PF01644
377629.TERTU_0317(PF01764)
377629.TERTU_0817(PF00331)
377629.TERTU_2687(PF01764)
377629.TERTU_4529(PF01947)
377629.TERTU_2560(PF05189)
377629.TERTU_1683(PF01764)
377629.TERTU_0331(PF00553)
377629.TERTU_1202(PF12038)
377629.TERTU_0852PF04922
377629.TERTU_2611(PF13875)
377629.TERTU_1674(PF03422)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================