Effective results for Pseudomonas putida W619 (eggnog40)

Summary

Number of putative secreted proteins: 663
- Predicted by EffectiveT3: 222 (high confidence), 275 (low confidence)
- Predicted by EffectiveCCBD: 15 within, 16 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 111
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 20 proteins (0 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
390235.PputW619_4752		(>)			mitochondrial; (mitochondrial)
390235.PputW619_3478			+		(ER); ER
390235.PputW619_0273			+		ER
390235.PputW619_0327			+		(ER)
390235.PputW619_5131			+		ER
390235.PputW619_0518		(>)			(ER); ER
390235.PputW619_1933		(>)			mitochondrial; (mitochondrial)
390235.PputW619_1480		(>)			ER
390235.PputW619_3087			+		(ER)
390235.PputW619_2369			+		ER
390235.PputW619_4512	+				(ER)
390235.PputW619_1149			+		ER; (ER)
390235.PputW619_1926		(<)			ER
390235.PputW619_3896			+		ER
390235.PputW619_0448			+		ER
390235.PputW619_1792	+				(mitochondrial)
390235.PputW619_0022			+		ER
390235.PputW619_4318			+		ER
390235.PputW619_3986			+		mitochondrial
390235.PputW619_4799		+			ER
390235.PputW619_4009			+		ER
390235.PputW619_2090		(>)			ER
390235.PputW619_3453	+				(mitochondrial)
390235.PputW619_2465			+		(ER); (mitochondrial)
390235.PputW619_1751	+				(mitochondrial)
390235.PputW619_3662		(>)			ER
390235.PputW619_3486		(>)			ER
390235.PputW619_1960		+			(ER)
390235.PputW619_2055	+				ER
390235.PputW619_3054	+				ER
390235.PputW619_4878	+				(mitochondrial)
390235.PputW619_0063			+		ER
390235.PputW619_0957		(<)			ER
390235.PputW619_0970			+		ER
390235.PputW619_0603			+		ER
390235.PputW619_3869	+				ER; (ER)
390235.PputW619_4130			+		ER
390235.PputW619_0559		+			mitochondrial
390235.PputW619_3250			+		ER
390235.PputW619_1728	+				(mitochondrial); (plastid)
390235.PputW619_1723			+		ER
390235.PputW619_1237		(>)			(mitochondrial)
390235.PputW619_0425			+		ER
390235.PputW619_0050			+		ER
390235.PputW619_2670			+		ER; (ER)
390235.PputW619_0045	+				ER
390235.PputW619_4856				(PF06293)	(ER)
390235.PputW619_3257			+		ER
390235.PputW619_0131		(<)			ER
390235.PputW619_1881	+				(mitochondrial); (plastid)
390235.PputW619_2447		+			ER
390235.PputW619_2445			+		ER
390235.PputW619_4548			+		ER
390235.PputW619_4267		(>)			(mitochondrial)
390235.PputW619_1011		+			ER
390235.PputW619_1446		(<)			ER
390235.PputW619_4647			+		ER
390235.PputW619_2275			+		mitochondrial
390235.PputW619_2491			+		ER
390235.PputW619_2659	+				(mitochondrial)
390235.PputW619_4365			+		ER
390235.PputW619_4384		(>)			ER
390235.PputW619_1590	+				ER
390235.PputW619_4160			+		ER
390235.PputW619_2768			+		ER
390235.PputW619_2422			+		ER
390235.PputW619_4853	+				mitochondrial; (mitochondrial)
390235.PputW619_2486				(PF01852)	ER
390235.PputW619_4887		+			ER; (mitochondrial)
390235.PputW619_3358	+				mitochondrial; (mitochondrial)
390235.PputW619_3518				(PF01852)	ER
390235.PputW619_4376			+		ER
390235.PputW619_5116			+		ER
390235.PputW619_2923		(<)			mitochondrial; (mitochondrial)
390235.PputW619_3857		+			ER
390235.PputW619_4983	+				(ER)
390235.PputW619_0062			+		mitochondrial; (mitochondrial)
390235.PputW619_1917		+			ER; (ER)
390235.PputW619_3992			+		ER
390235.PputW619_3634		(>)			ER
390235.PputW619_2757			+		ER
390235.PputW619_4973		(>)			ER
390235.PputW619_3578	(+)				ER
390235.PputW619_1581	(+)				(ER); (plastid)
390235.PputW619_2563	(+)				ER
390235.PputW619_3569	+				(ER)
390235.PputW619_4218	(+)				(ER)
390235.PputW619_3928	+				plastid
390235.PputW619_0511	(+)				mitochondrial
390235.PputW619_1954	+	(<)
390235.PputW619_1732	+				(plastid)
390235.PputW619_2554	(+)				(mitochondrial)
390235.PputW619_3627				(PF03253)	(ER)
390235.PputW619_0462	(+)				mitochondrial
390235.PputW619_3334	(+)				ER
390235.PputW619_4791	+	(>)
390235.PputW619_1307	+				(ER)
390235.PputW619_5054	(+)				mitochondrial
390235.PputW619_2408	(+)				mitochondrial
390235.PputW619_4483	+				(plastid)
390235.PputW619_3686	+				plastid
390235.PputW619_0766	+				(plastid)
390235.PputW619_2613	+				(plastid)
390235.PputW619_4278		(<)	+
390235.PputW619_0578	(+)				(ER)
390235.PputW619_2049	+		+
390235.PputW619_2601	+				(ER)
390235.PputW619_4286	(+)				(mitochondrial)
390235.PputW619_3723	+		+
390235.PputW619_0293	+				(plastid)
390235.PputW619_0638	(+)				(mitochondrial); plastid
390235.PputW619_2456	(+)				ER
390235.PputW619_4451			+		(ER)
390235.PputW619_4859				(PF06293)	(mitochondrial)
390235.PputW619_0042		(<)			(mitochondrial)
390235.PputW619_3703	+				plastid
390235.PputW619_0683	(+)				(mitochondrial)
390235.PputW619_0424	(+)				(ER)
390235.PputW619_1665	(+)				(mitochondrial)
390235.PputW619_2013	(+)				(ER)
390235.PputW619_2015	+				(plastid)
390235.PputW619_2473			+		(ER)
390235.PputW619_2176	(+)				mitochondrial; (mitochondrial)
390235.PputW619_4943	+				(plastid)
390235.PputW619_5169	(+)				(mitochondrial)
390235.PputW619_1641	(+)				ER
390235.PputW619_3731	+				plastid
390235.PputW619_4390	(+)				(ER)
390235.PputW619_3420	+				(mitochondrial)
390235.PputW619_5195	+				(plastid)
390235.PputW619_4563	(+)				(ER)
390235.PputW619_3722	+				plastid
390235.PputW619_0248	+			(PF06945)
390235.PputW619_1445	+				(plastid)
390235.PputW619_3994	(+)				(ER)
390235.PputW619_3751	(+)		+	(PF05711)
390235.PputW619_3577			+
390235.PputW619_4573	+
390235.PputW619_5031			+
390235.PputW619_3404		(>)
390235.PputW619_0182			+
390235.PputW619_1457	+
390235.PputW619_5085	+
390235.PputW619_3296	+
390235.PputW619_0475	+
390235.PputW619_5134	(+)		+
390235.PputW619_5135		+
390235.PputW619_4271			+
390235.PputW619_1059	(+)				(mitochondrial)
390235.PputW619_1630	+
390235.PputW619_1635	+				not used
390235.PputW619_2903	(+)				(mitochondrial)
390235.PputW619_2344		(>)
390235.PputW619_3185	+
390235.PputW619_5149			+
390235.PputW619_2588	(+)				(ER)
390235.PputW619_2580	+
390235.PputW619_2581		+
390235.PputW619_2567		(>)
390235.PputW619_3365			+
390235.PputW619_3743	+
390235.PputW619_3747		(<)
390235.PputW619_3746				(PF05711)
390235.PputW619_2643	+
390235.PputW619_4690	(+)				(ER)
390235.PputW619_4320	+
390235.PputW619_2965	(+)				(plastid)
390235.PputW619_2139	(+)				(mitochondrial); not used
390235.PputW619_4037	+
390235.PputW619_0197	+
390235.PputW619_0461	+
390235.PputW619_2248	+
390235.PputW619_1756	+
390235.PputW619_0048			+
390235.PputW619_0685	+
390235.PputW619_2917	+
390235.PputW619_1934		(>)
390235.PputW619_1338	+
390235.PputW619_1332			+
390235.PputW619_2224	+
390235.PputW619_3884			+
390235.PputW619_3175	(+)				(ER)
390235.PputW619_2574	+
390235.PputW619_2573	+
390235.PputW619_3086	+
390235.PputW619_3314	+
390235.PputW619_2685	+
390235.PputW619_3958	+
390235.PputW619_3555	+
390235.PputW619_4511	+
390235.PputW619_0188	+
390235.PputW619_3424	+
390235.PputW619_1666			+
390235.PputW619_0852	+
390235.PputW619_0456			+
390235.PputW619_0774			+
390235.PputW619_0805	+
390235.PputW619_2961	(+)				(mitochondrial)
390235.PputW619_5201			+
390235.PputW619_0144	+
390235.PputW619_0146	+
390235.PputW619_1320		(>)
390235.PputW619_1814	+				not used
390235.PputW619_2360			+
390235.PputW619_2214	+
390235.PputW619_3096				(PF07080)
390235.PputW619_3095				(PF07080)
390235.PputW619_2784	(+)				(ER)
390235.PputW619_2142	+
390235.PputW619_3767	+
390235.PputW619_0598	+
390235.PputW619_3786			+
390235.PputW619_4835	+
390235.PputW619_4783		(<)
390235.PputW619_1355	+
390235.PputW619_0339	+
390235.PputW619_0847	+
390235.PputW619_1213	+
390235.PputW619_1311	+
390235.PputW619_1317	+
390235.PputW619_1959			+
390235.PputW619_1175	+
390235.PputW619_2559	+
390235.PputW619_2157	+
390235.PputW619_3548	+
390235.PputW619_3843	+
390235.PputW619_4648			+
390235.PputW619_1475	+
390235.PputW619_4396		(<)
390235.PputW619_2939	+
390235.PputW619_1781	(+)			(PF06945)
390235.PputW619_0545	+
390235.PputW619_0167	(+)				(ER)
390235.PputW619_2894	+
390235.PputW619_2896	+
390235.PputW619_1164	+
390235.PputW619_2137	+
390235.PputW619_2096	(+)				(plastid)
390235.PputW619_2097	+
390235.PputW619_2959	+
390235.PputW619_3925	+
390235.PputW619_3321	+
390235.PputW619_4817	+
390235.PputW619_4013	+
390235.PputW619_3452			+
390235.PputW619_4673	+
390235.PputW619_4670			+
390235.PputW619_4110		(>)
390235.PputW619_5028	+
390235.PputW619_4108	+
390235.PputW619_0487	(+)				(ER)
390235.PputW619_0797	+
390235.PputW619_5058	+
390235.PputW619_1682	+
390235.PputW619_1687	+
390235.PputW619_0174	+
390235.PputW619_0177	+
390235.PputW619_2244	+
390235.PputW619_2402	+
390235.PputW619_2537	(+)		+
390235.PputW619_2534		(<)
390235.PputW619_3132	(+)				plastid
390235.PputW619_4599			+
390235.PputW619_4807	+
390235.PputW619_3665			+
390235.PputW619_4660		(>)
390235.PputW619_0336		+
390235.PputW619_1565			+
390235.PputW619_1564			+
390235.PputW619_0818	+
390235.PputW619_2982			+
390235.PputW619_0436	+
390235.PputW619_2051			+
390235.PputW619_2611	+
390235.PputW619_2619	+
390235.PputW619_3279	+
390235.PputW619_3878	+
390235.PputW619_3697	+
390235.PputW619_4877	(+)		+
390235.PputW619_4586			+
390235.PputW619_4618		(>)
390235.PputW619_4619	+
390235.PputW619_3476	(+)	(>)
390235.PputW619_4611	+
390235.PputW619_4298	+
390235.PputW619_1629	+
390235.PputW619_0263			+
390235.PputW619_4105	+
390235.PputW619_0573	+
390235.PputW619_0972				(PF06293)
390235.PputW619_0112	+
390235.PputW619_0117	+
390235.PputW619_0116	+
390235.PputW619_0114	+
390235.PputW619_1421	+
390235.PputW619_1423	(+)			(PF06293)
390235.PputW619_3269	+
390235.PputW619_3260	+
390235.PputW619_1646		(>)
390235.PputW619_2996	+
390235.PputW619_3119	+
390235.PputW619_3112	+
390235.PputW619_0192			+
390235.PputW619_3804		(>)
390235.PputW619_3290	(+)		+
390235.PputW619_4590			+
390235.PputW619_4609	+
390235.PputW619_4910	+
390235.PputW619_3598			+
390235.PputW619_4041	+
390235.PputW619_4139			+
390235.PputW619_0348	(+)				(mitochondrial)
390235.PputW619_0228	+
390235.PputW619_0298	+
390235.PputW619_4726			+
390235.PputW619_2245		(>)
390235.PputW619_5157	+
390235.PputW619_1343		(>)
390235.PputW619_1346		(>)
390235.PputW619_1236	(+)				(plastid)
390235.PputW619_2854	+
390235.PputW619_2290	+
390235.PputW619_3078	+
390235.PputW619_4858				(PF06293)
390235.PputW619_4857				(PF06293)
390235.PputW619_3658	+
390235.PputW619_4924	+
390235.PputW619_4632	+
390235.PputW619_1550	+
390235.PputW619_4147	+
390235.PputW619_3702	+
390235.PputW619_0284			+
390235.PputW619_0915	+
390235.PputW619_1403	+
390235.PputW619_1405	+
390235.PputW619_0621	+
390235.PputW619_2859	+
390235.PputW619_2258	+
390235.PputW619_2660	+
390235.PputW619_3629				(PF03253)
390235.PputW619_2711	+
390235.PputW619_3337			+
390235.PputW619_4989	+
390235.PputW619_1491	+
390235.PputW619_3924	+
390235.PputW619_4448	+
390235.PputW619_4714	+
390235.PputW619_4717		(<)
390235.PputW619_4713	+
390235.PputW619_4153		(>)
390235.PputW619_4949		(>)
390235.PputW619_1263			+
390235.PputW619_5059			+
390235.PputW619_1523	(+)				(ER)
390235.PputW619_1016	+
390235.PputW619_1419	(+)	+
390235.PputW619_1708			+
390235.PputW619_4953	+
390235.PputW619_0918	(+)				(mitochondrial)
390235.PputW619_1874	+
390235.PputW619_1878				(PF07080)
390235.PputW619_2016	+
390235.PputW619_2494	+
390235.PputW619_2129	+
390235.PputW619_3839	+
390235.PputW619_3636	+
390235.PputW619_4942	+
390235.PputW619_4382	+
390235.PputW619_4380	+
390235.PputW619_4164				(PF06945)
390235.PputW619_4161	+
390235.PputW619_4411	(+)	(<)
390235.PputW619_2751	+
390235.PputW619_2495	+
390235.PputW619_1469	+
390235.PputW619_0932	+
390235.PputW619_5161	+
390235.PputW619_5160				(PF06945)	not used
390235.PputW619_2865	+
390235.PputW619_2864				(PF06945)
390235.PputW619_3950	(+)				(ER)
390235.PputW619_3128		(>)
390235.PputW619_1284	+
390235.PputW619_1280		(>)
390235.PputW619_0548	+
390235.PputW619_1115		+
390235.PputW619_2463	+
390235.PputW619_2487	+
390235.PputW619_2488	+
390235.PputW619_3730		(>)
390235.PputW619_3734		(>)
390235.PputW619_3028	(+)				(plastid)
390235.PputW619_3024	+
390235.PputW619_3655	+
390235.PputW619_4413		(<)
390235.PputW619_3354		(>)
390235.PputW619_3600		(>)
390235.PputW619_4426		+
390235.PputW619_0326	+
390235.PputW619_4954	+
390235.PputW619_3515	(+)				(mitochondrial)
390235.PputW619_3996	(+)	(>)
390235.PputW619_2241	+
390235.PputW619_4378		(>)
390235.PputW619_5074	+
390235.PputW619_0090			+
390235.PputW619_4901			+
390235.PputW619_0258	+
390235.PputW619_1474	+
390235.PputW619_5113	+
390235.PputW619_4420	+
390235.PputW619_2816			+
390235.PputW619_5026	+
390235.PputW619_1074			+
390235.PputW619_1296		(<)
390235.PputW619_2929	+
390235.PputW619_2922	+
390235.PputW619_1104	+
390235.PputW619_3380	+
390235.PputW619_2100	+
390235.PputW619_4848	+
390235.PputW619_0640	+
390235.PputW619_2746	(+)				(ER)
390235.PputW619_4410			+
390235.PputW619_4984	+
390235.PputW619_4988	+
390235.PputW619_4405	+
390235.PputW619_3124			+
390235.PputW619_4347			+
390235.PputW619_0216	+
390235.PputW619_5109	+
390235.PputW619_0065	(+)	+
390235.PputW619_5034	+
390235.PputW619_0661	+
390235.PputW619_0663	+
390235.PputW619_4547		(>)
390235.PputW619_4475	+
390235.PputW619_3993			+
390235.PputW619_0835			+
390235.PputW619_2267			+
390235.PputW619_2023	+
390235.PputW619_2262	+
390235.PputW619_5100	(+)				(mitochondrial)
390235.PputW619_2750	+
390235.PputW619_3370			+
390235.PputW619_1949	+
390235.PputW619_0423	(+)				(mitochondrial)
390235.PputW619_1857	(+)
390235.PputW619_4357	(+)
390235.PputW619_0278	(+)
390235.PputW619_0272	(+)
390235.PputW619_0274	(+)
390235.PputW619_0053	(+)
390235.PputW619_0508	(+)
390235.PputW619_1838	(+)
390235.PputW619_2235	(+)
390235.PputW619_2236	(+)
390235.PputW619_2237	(+)
390235.PputW619_1126	(+)
390235.PputW619_4141	(+)				not used
390235.PputW619_2884	(+)
390235.PputW619_3187	(+)
390235.PputW619_2589	(+)
390235.PputW619_0034	(+)
390235.PputW619_2568	(+)
390235.PputW619_3564	(+)
390235.PputW619_4219	(+)
390235.PputW619_0190	(+)
390235.PputW619_5120	(+)
390235.PputW619_5017	(+)
390235.PputW619_0149	(+)
390235.PputW619_1088	(+)
390235.PputW619_2226	(+)
390235.PputW619_4557	(+)
390235.PputW619_2599	(+)
390235.PputW619_4499	(+)
390235.PputW619_2683	(+)
390235.PputW619_3287	(+)
390235.PputW619_4881	(+)
390235.PputW619_4683	(+)
390235.PputW619_4021	(+)
390235.PputW619_0857	(+)
390235.PputW619_0459	(+)
390235.PputW619_3890	(+)
390235.PputW619_0039	(+)
390235.PputW619_0520	(+)
390235.PputW619_2968	(+)
390235.PputW619_2969	(+)
390235.PputW619_5202	(+)
390235.PputW619_1811	(+)
390235.PputW619_1815	(+)
390235.PputW619_3895	(+)
390235.PputW619_2831	(+)
390235.PputW619_2547	(+)
390235.PputW619_2144	(+)
390235.PputW619_0220	(+)
390235.PputW619_2143	(+)
390235.PputW619_2976	(+)
390235.PputW619_5210	(+)
390235.PputW619_3394	(+)
390235.PputW619_4840	(+)
390235.PputW619_1952	(+)
390235.PputW619_2377	(+)
390235.PputW619_2790	(+)
390235.PputW619_3207	(+)
390235.PputW619_1449	(+)
390235.PputW619_3847	(+)
390235.PputW619_4641	(+)
390235.PputW619_4226	(+)
390235.PputW619_1438	(+)
390235.PputW619_4941	(+)
390235.PputW619_1128	(+)
390235.PputW619_2334	(+)
390235.PputW619_0499	(+)
390235.PputW619_1018	(+)
390235.PputW619_2945	(+)
390235.PputW619_4304	(+)
390235.PputW619_4657	(+)
390235.PputW619_4301	(+)
390235.PputW619_1945	(+)
390235.PputW619_1944	(+)
390235.PputW619_1768	(+)
390235.PputW619_2095	(+)
390235.PputW619_2813	(+)
390235.PputW619_2814	(+)
390235.PputW619_3921	(+)
390235.PputW619_2131	(+)
390235.PputW619_4258	(+)
390235.PputW619_0675	(+)
390235.PputW619_5188	(+)
390235.PputW619_3369	(+)
390235.PputW619_0176	(+)
390235.PputW619_3963	(+)
390235.PputW619_1195	(+)
390235.PputW619_1993	(+)
390235.PputW619_3045	(+)
390235.PputW619_1540	(+)
390235.PputW619_1694	(+)
390235.PputW619_5086	(+)
390235.PputW619_0104	(+)
390235.PputW619_1362	(+)
390235.PputW619_1181	(+)
390235.PputW619_2326	(+)
390235.PputW619_2509	(+)
390235.PputW619_3123	(+)
390235.PputW619_2186	(+)
390235.PputW619_2617	(+)
390235.PputW619_3273	(+)
390235.PputW619_3275	(+)
390235.PputW619_1005	(+)
390235.PputW619_0811	(+)
390235.PputW619_3677	(+)
390235.PputW619_3674	(+)
390235.PputW619_4724	(+)
390235.PputW619_4722	(+)
390235.PputW619_2031	(+)
390235.PputW619_1517	(+)
390235.PputW619_1359	(+)
390235.PputW619_1706	(+)
390235.PputW619_1733	(+)
390235.PputW619_3599	(+)
390235.PputW619_4285	(+)
390235.PputW619_0349	(+)
390235.PputW619_3592	(+)
390235.PputW619_3593	(+)
390235.PputW619_0636	(+)
390235.PputW619_1232	(+)
390235.PputW619_2822	(+)
390235.PputW619_1658	(+)
390235.PputW619_2452	(+)
390235.PputW619_3102	(+)
390235.PputW619_0713	(+)
390235.PputW619_2676	(+)
390235.PputW619_4926	(+)
390235.PputW619_4709	(+)
390235.PputW619_2794	(+)
390235.PputW619_3700	(+)
390235.PputW619_1813	(+)
390235.PputW619_0281	(+)
390235.PputW619_4113	(+)
390235.PputW619_5141	(+)
390235.PputW619_1400	(+)
390235.PputW619_1401	(+)
390235.PputW619_0631	(+)
390235.PputW619_1084	(+)
390235.PputW619_1882	(+)
390235.PputW619_2858	(+)
390235.PputW619_1894	(+)
390235.PputW619_1869	(+)
390235.PputW619_1497	(+)
390235.PputW619_3005	(+)
390235.PputW619_4094	(+)
390235.PputW619_4937	(+)
390235.PputW619_4933	(+)
390235.PputW619_1247	(+)
390235.PputW619_4621	(+)
390235.PputW619_2645	(+)
390235.PputW619_2899	(+)
390235.PputW619_4154	(+)
390235.PputW619_4532	(+)
390235.PputW619_1015	(+)
390235.PputW619_4531	(+)
390235.PputW619_0382	(+)
390235.PputW619_5171	(+)
390235.PputW619_5175	(+)
390235.PputW619_1382	(+)
390235.PputW619_2871	(+)
390235.PputW619_2277	(+)
390235.PputW619_1899	(+)
390235.PputW619_2018	(+)
390235.PputW619_4231	(+)
390235.PputW619_1140	(+)
390235.PputW619_3383	(+)
390235.PputW619_2723	(+)
390235.PputW619_0233	(+)
390235.PputW619_1046	(+)
390235.PputW619_2578	(+)
390235.PputW619_3318	(+)
390235.PputW619_5165	(+)
390235.PputW619_5163	(+)
390235.PputW619_0552	(+)
390235.PputW619_3811	(+)
390235.PputW619_2688	(+)
390235.PputW619_1842	(+)
390235.PputW619_1847	(+)
390235.PputW619_3612	(+)
390235.PputW619_1963	(+)
390235.PputW619_3605	(+)
390235.PputW619_3285	(+)
390235.PputW619_4957	(+)
390235.PputW619_4959	(+)
390235.PputW619_4374	(+)
390235.PputW619_4082	(+)
390235.PputW619_4922	(+)
390235.PputW619_0896	(+)
390235.PputW619_0891	(+)
390235.PputW619_1136	(+)
390235.PputW619_0412	(+)
390235.PputW619_5020	(+)
390235.PputW619_0679	(+)
390235.PputW619_3831	(+)
390235.PputW619_1612	(+)
390235.PputW619_2924	(+)
390235.PputW619_3382	(+)
390235.PputW619_3954	(+)
390235.PputW619_2749	(+)
390235.PputW619_3345	(+)
390235.PputW619_3721	(+)
390235.PputW619_3508	(+)
390235.PputW619_0351	(+)
390235.PputW619_0719	(+)
390235.PputW619_0405	(+)
390235.PputW619_2807	(+)
390235.PputW619_2804	(+)
390235.PputW619_5173	(+)
390235.PputW619_4474	(+)
390235.PputW619_3957	(+)
390235.PputW619_1133	(+)
390235.PputW619_1131	(+)
390235.PputW619_1138	(+)
390235.PputW619_3871	(+)
390235.PputW619_3392	(+)
390235.PputW619_4050	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.5 (5/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.875 (15/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================