Effective results for Stenotrophomonas maltophilia R551-3 (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 44
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 47 proteins (1 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391008.Smal_2875(PF01431) (PF05649)ER
391008.Smal_1199(PF01431) (PF05649)ER
391008.Smal_0428(PF01431) (PF05649)ER
391008.Smal_2116+ER
391008.Smal_0065(PF11720)ER
391008.Smal_0398(PF03203)ER
391008.Smal_3458+(ER); ER
391008.Smal_3293+ER
391008.Smal_3294+ER
391008.Smal_0126(PF03544)ER
391008.Smal_2734+(mitochondrial)
391008.Smal_1195+ER
391008.Smal_2675(PF03544)ER
391008.Smal_3582(PF03901)ER
391008.Smal_4024+ER
391008.Smal_2985+ER
391008.Smal_0697+ER
391008.Smal_2326+ER
391008.Smal_2327+ER
391008.Smal_0368(PF03544)(mitochondrial); plastid
391008.Smal_2661+(ER)
391008.Smal_3483(PF08212)ER
391008.Smal_3832+ER
391008.Smal_3308(PF03544)ER
391008.Smal_0417+ER
391008.Smal_1950(PF08212)ER
391008.Smal_3813+(ER)
391008.Smal_2775(PF08212)ER
391008.Smal_3224(PF03544)ER
391008.Smal_3351(PF04450)ER
391008.Smal_1840(PF03544)(mitochondrial); (ER)
391008.Smal_1841(PF03544)ER
391008.Smal_3696(PF04505)ER
391008.Smal_2357(PF11720)ER
391008.Smal_3007+ER
391008.Smal_0623(PF03544)ER
391008.Smal_3748(PF07653)mitochondrial
391008.Smal_2112+(ER)
391008.Smal_0078(PF11720)ER
391008.Smal_2391(PF03544)ER
391008.Smal_3868(PF03544)ER; (ER)
391008.Smal_2874(PF01431) (PF05649)
391008.Smal_2989(PF05684)(ER)
391008.Smal_2536(PF03544)(ER)
391008.Smal_1092(PF05684)(ER)
391008.Smal_0790+(mitochondrial)
391008.Smal_3697(PF04505)(ER)
391008.Smal_1215(PF03203)(mitochondrial)
391008.Smal_2903(PF03544)(mitochondrial)
391008.Smal_3741+(mitochondrial)
391008.Smal_3412+(ER)
391008.Smal_3091(PF03544)(plastid)
391008.Smal_3071+(mitochondrial)
391008.Smal_3864(PF08695)plastid
391008.Smal_0719+
391008.Smal_1659+
391008.Smal_3590(PF14237)
391008.Smal_0008(PF03544)
391008.Smal_2678+
391008.Smal_3589(PF14237)
391008.Smal_0361+
391008.Smal_2662+
391008.Smal_2537(PF03544)
391008.Smal_3131+
391008.Smal_2847+
391008.Smal_1886+
391008.Smal_1887+
391008.Smal_1647+
391008.Smal_2543+
391008.Smal_3173+
391008.Smal_0309+
391008.Smal_0794(PF05076)
391008.Smal_3964(PF05076)
391008.Smal_3960+
391008.Smal_3995(PF14237)
391008.Smal_3993+
391008.Smal_2160(PF03203)
391008.Smal_3760(PF08212)
391008.Smal_3765+
391008.Smal_1216PF17067not used
391008.Smal_2900+
391008.Smal_2176+
391008.Smal_2352(PF11397)
391008.Smal_0622(PF11539)
391008.Smal_2726(PF04768)
391008.Smal_4030(PF05076)
391008.Smal_0281+
391008.Smal_1736+
391008.Smal_3389+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================