Effective results for Sphingomonas wittichii RW1 (eggnog40)
Summary
Number of putative secreted proteins: 524
- Predicted by T4SEpre: 55
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 482 proteins (107 high, 375 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 392499.Swit_0899 | + | (PF07715) (PF00593) | ER | ||
| 392499.Swit_3395 | + | (PF07715) (PF00593) | ER | ||
| 392499.Swit_4231 | + | (PF07715) (PF00593) | ER | ||
| 392499.Swit_2477 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3263 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1776 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_1573 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0730 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_3336 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2060 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2240 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4145 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_0505 | (PF07715) (PF00593) | (mitochondrial); (ER) | |||
| 392499.Swit_1747 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_4151 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0725 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_3857 | (PF07715) (PF00593) | mitochondrial; ER | |||
| 392499.Swit_2075 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0714 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0538 | PF00355 PF00848 | mitochondrial | |||
| 392499.Swit_0532 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0535 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1910 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_3281 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2621 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1722 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4179 | (PF07715) (PF00593) | mitochondrial; (mitochondrial) | |||
| 392499.Swit_4173 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1436 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4350 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_1656 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0706 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4282 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0709 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0673 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_3653 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2522 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3861 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4348 | (PF07715) (PF00593) | (ER); ER | |||
| 392499.Swit_4618 | (PF07715) (PF00593) | ER; (mitochondrial) | |||
| 392499.Swit_4611 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1702 | (PF07715) (PF00593) | (mitochondrial); mitochondrial | |||
| 392499.Swit_1484 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2517 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3044 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0478 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4625 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4330 | + | (PF07715) (PF00593) | (ER) | ||
| 392499.Swit_4332 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4025 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_1673 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1671 | (PF07715) (PF00593) | (mitochondrial); mitochondrial | |||
| 392499.Swit_3256 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_4804 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3103 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_3032 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2291 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_2500 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_2507 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1081 | (PF07715) (PF00593) | mitochondrial; (mitochondrial) | |||
| 392499.Swit_1063 | (PF07715) (PF00593) | ER; (mitochondrial) | |||
| 392499.Swit_1066 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4253 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4257 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_3241 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_0999 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3027 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3758 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3750 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_1583 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_1502 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4318 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_0838 | (PF07715) (PF00593) | ER; plastid | |||
| 392499.Swit_3560 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3561 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3766 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_1191 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_1868 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_4129 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_4125 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1688 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4781 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_3918 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4274 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_0931 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4302 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0330 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2885 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2950 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1859 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4206 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0812 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0818 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0924 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2301 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2300 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1443 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1022 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1534 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_1539 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_4214 | (PF07715) (PF00593) | mitochondrial | |||
| 392499.Swit_4696 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4852 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4197 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_0540 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1169 | (PF07715) (PF00593) | ER; (ER) | |||
| 392499.Swit_0302 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3091 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1794 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_0687 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3080 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_2041 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_2264 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4738 | (PF07715) (PF00593) | (ER); (mitochondrial) | |||
| 392499.Swit_4085 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_4088 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_3189 | (PF07715) (PF00593) | ER | |||
| 392499.Swit_1775 | (PF01979) | mitochondrial; (mitochondrial) | |||
| 392499.Swit_1774 | (PF01979) | ER | |||
| 392499.Swit_0762 | (PF00676) (PF02779) (PF02780) | ||||
| 392499.Swit_4227 | (PF01557) | mitochondrial | |||
| 392499.Swit_1116 | (PF07715) | ER; (ER) | |||
| 392499.Swit_3331 | PF07110 | mitochondrial | |||
| 392499.Swit_3422 | (PF07715) | ER | |||
| 392499.Swit_2115 | (PF01979) | ER | |||
| 392499.Swit_4429 | + | ER | |||
| 392499.Swit_1900 | (PF01011) | ER | |||
| 392499.Swit_1901 | (PF07715) | ER; (ER) | |||
| 392499.Swit_4373 | + | ER | |||
| 392499.Swit_3074 | (PF02538) | (mitochondrial); (plastid) | |||
| 392499.Swit_2255 | (PF13669) | (ER) | |||
| 392499.Swit_0715 | (PF07969) | ER | |||
| 392499.Swit_0533 | (PF01979) | ER | |||
| 392499.Swit_2009 | PF07110 | mitochondrial | |||
| 392499.Swit_2396 | (PF07969) | ER | |||
| 392499.Swit_0419 | + | ER | |||
| 392499.Swit_4358 | (PF07715) | ER | |||
| 392499.Swit_0890 | PF00355 PF00848 | (mitochondrial) | |||
| 392499.Swit_3654 | (PF04909) | mitochondrial | |||
| 392499.Swit_0468 | + | (ER); ER | |||
| 392499.Swit_1939 | + | ER | |||
| 392499.Swit_4619 | (PF14534) | ER | |||
| 392499.Swit_3480 | + | mitochondrial | |||
| 392499.Swit_2355 | + | (ER) | |||
| 392499.Swit_1252 | (PF13469) | ER | |||
| 392499.Swit_0079 | (PF01979) | ER | |||
| 392499.Swit_1076 | (PF00450) | ER | |||
| 392499.Swit_1676 | (PF07715) | (ER) | |||
| 392499.Swit_0277 | (PF07715) | ER | |||
| 392499.Swit_0035 | + | ER | |||
| 392499.Swit_2295 | (PF01557) | (ER) | |||
| 392499.Swit_2505 | (PF16123) | (ER) | |||
| 392499.Swit_1082 | (PF00450) | ER | |||
| 392499.Swit_1663 | (PF16123) | ER; (ER) | |||
| 392499.Swit_0913 | (PF01979) | ER | |||
| 392499.Swit_3243 | (PF07969) | mitochondrial | |||
| 392499.Swit_3242 | (PF07969) | (mitochondrial) | |||
| 392499.Swit_3245 | (PF07969) | ER | |||
| 392499.Swit_3246 | (PF07969) | ER | |||
| 392499.Swit_2574 | + | ER | |||
| 392499.Swit_2575 | (PF07715) | ER | |||
| 392499.Swit_1985 | (PF07715) | ER | |||
| 392499.Swit_4269 | PF00355 | (ER) | |||
| 392499.Swit_4319 | (PF00450) | mitochondrial | |||
| 392499.Swit_3581 | (PF14534) | ER | |||
| 392499.Swit_3767 | (PF07969) | ER | |||
| 392499.Swit_2417 | (PF00450) | ER | |||
| 392499.Swit_2416 | (PF01979) | ER | |||
| 392499.Swit_2414 | (PF00450) | ER | |||
| 392499.Swit_1862 | PF07110 | mitochondrial | |||
| 392499.Swit_1867 | (PF01979) | mitochondrial | |||
| 392499.Swit_4309 | (PF01557) | (ER) | |||
| 392499.Swit_4873 | + | mitochondrial | |||
| 392499.Swit_3225 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_2083 | + | (PF01968) (PF05378) | |||
| 392499.Swit_3773 | (PF00450) | ER | |||
| 392499.Swit_2313 | (PF04909) | mitochondrial | |||
| 392499.Swit_2227 | (PF01011) | mitochondrial | |||
| 392499.Swit_2420 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_1218 | PF10345 | ER | |||
| 392499.Swit_4669 | + | (mitochondrial); plastid | |||
| 392499.Swit_3144 | + | (PF07715) (PF00593) | |||
| 392499.Swit_1273 | + | ER | |||
| 392499.Swit_4304 | (PF01979) | ER | |||
| 392499.Swit_1020 | PF07110 | (mitochondrial); (plastid) | |||
| 392499.Swit_1234 | + | ER | |||
| 392499.Swit_4008 | + | (mitochondrial) | |||
| 392499.Swit_1542 | PF00355 | (mitochondrial) | |||
| 392499.Swit_3458 | + | ER | |||
| 392499.Swit_2922 | (PF01979) | (mitochondrial) | |||
| 392499.Swit_1224 | (PF00676) | (mitochondrial) | |||
| 392499.Swit_1821 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_1820 | (PF07969) | ER | |||
| 392499.Swit_1001 | (PF01011) | (mitochondrial) | |||
| 392499.Swit_0681 | (PF01979) | ER | |||
| 392499.Swit_1175 | (PF14534) | (mitochondrial); plastid | |||
| 392499.Swit_4521 | + | ER | |||
| 392499.Swit_3884 | (PF00676) (PF02780) (PF02779) | ||||
| 392499.Swit_2996 | (PF06455) | ER | |||
| 392499.Swit_3406 | (PF07715) | ER | |||
| 392499.Swit_3314 | (PF07715) | (ER) | |||
| 392499.Swit_3312 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_0080 | (PF07969) | ER | |||
| 392499.Swit_1810 | (PF07715) (PF00593) | (mitochondrial) | |||
| 392499.Swit_0693 | (PF01011) | ER | |||
| 392499.Swit_0185 | + | (mitochondrial); plastid | |||
| 392499.Swit_0981 | (PF07715) (PF00593) | (ER) | |||
| 392499.Swit_4343 | (PF01968) (PF05378) (PF02538) | ||||
| 392499.Swit_3327 | PF07110 | (mitochondrial) | |||
| 392499.Swit_2059 | (PF07969) | ER | |||
| 392499.Swit_2121 | (PF00593) | ER | |||
| 392499.Swit_2271 | PF00355 PF00848 | ||||
| 392499.Swit_2471 | (PF07715) (PF00593) | ||||
| 392499.Swit_4226 | (PF01968) (PF05378) | ||||
| 392499.Swit_3048 | (PF07715) (PF00593) | ||||
| 392499.Swit_0840 | (PF02779) (PF02780) | ||||
| 392499.Swit_1454 | + | (ER) | |||
| 392499.Swit_1298 | (PF00676) (PF02779) | ||||
| 392499.Swit_4143 | (PF01968) (PF05378) | ||||
| 392499.Swit_4140 | (PF07715) (PF00593) | ||||
| 392499.Swit_0347 | (PF02779) (PF02780) | ||||
| 392499.Swit_3075 | (PF01968) (PF05378) | ||||
| 392499.Swit_2253 | PF00355 PF00848 | ||||
| 392499.Swit_2601 | (PF02780) (PF02779) | ||||
| 392499.Swit_1758 | PF00355 PF00848 | ||||
| 392499.Swit_1624 | + | (plastid) | |||
| 392499.Swit_0667 | (PF02779) (PF02780) | ||||
| 392499.Swit_1727 | + | (plastid) | |||
| 392499.Swit_4174 | PF00355 PF00848 | ||||
| 392499.Swit_4280 | PF00355 PF00848 | ||||
| 392499.Swit_0896 | PF00355 PF00848 | ||||
| 392499.Swit_2634 | PF00355 PF00848 | ||||
| 392499.Swit_3863 | (PF09298) (PF01557) | ||||
| 392499.Swit_3649 | (PF01968) (PF05378) | ||||
| 392499.Swit_2029 | PF13577 | (ER) | |||
| 392499.Swit_1559 | PF00355 PF00848 | ||||
| 392499.Swit_0475 | (PF01968) (PF05378) | ||||
| 392499.Swit_4621 | PF00355 PF00848 | ||||
| 392499.Swit_1077 | (PF07715) (PF00593) | ||||
| 392499.Swit_2035 | (PF01968) (PF05378) | ||||
| 392499.Swit_2033 | (PF07715) (PF00593) | ||||
| 392499.Swit_1719 | (PF01968) (PF05378) | ||||
| 392499.Swit_0914 | (PF07715) (PF00593) | ||||
| 392499.Swit_3937 | + | (plastid) | |||
| 392499.Swit_1874 | PF00355 PF00848 | ||||
| 392499.Swit_1988 | PF00355 PF00848 | ||||
| 392499.Swit_1056 | (PF02779) (PF02780) | ||||
| 392499.Swit_1052 | (PF02423) | (ER) | |||
| 392499.Swit_4262 | (PF02423) | (ER) | |||
| 392499.Swit_3580 | (PF07715) (PF00593) | ||||
| 392499.Swit_1461 | (PF02779) (PF02780) | ||||
| 392499.Swit_1685 | (PF09298) (PF01557) | ||||
| 392499.Swit_0932 | PF00355 PF00848 | ||||
| 392499.Swit_0336 | PF00355 PF00848 | ||||
| 392499.Swit_2226 | (PF07715) (PF00593) | ||||
| 392499.Swit_0765 | (PF07715) (PF00593) | ||||
| 392499.Swit_1039 | (PF02780) (PF02779) | ||||
| 392499.Swit_4150 | PF00355 PF00848 | ||||
| 392499.Swit_0324 | PF00355 PF00848 | ||||
| 392499.Swit_0921 | (PF07715) (PF00593) | ||||
| 392499.Swit_2892 | + | (PF13669) | |||
| 392499.Swit_2309 | (PF14534) | (mitochondrial) | |||
| 392499.Swit_0588 | + | (plastid) | |||
| 392499.Swit_1531 | PF00355 PF00848 | ||||
| 392499.Swit_3796 | + | (ER) | |||
| 392499.Swit_0781 | (PF02780) (PF02779) | ||||
| 392499.Swit_1547 | (PF01557) | (plastid) | |||
| 392499.Swit_3410 | + | PF00355 | |||
| 392499.Swit_2144 | (PF02779) (PF02780) | ||||
| 392499.Swit_1225 | (PF02780) (PF02779) | ||||
| 392499.Swit_0964 | (PF07715) (PF00593) | ||||
| 392499.Swit_4188 | PF00355 PF00848 | ||||
| 392499.Swit_1558 | (PF09298) (PF01557) | ||||
| 392499.Swit_0680 | (PF07715) (PF00593) | ||||
| 392499.Swit_0973 | PF00355 PF00848 | ||||
| 392499.Swit_2045 | (PF07715) (PF00593) | ||||
| 392499.Swit_2269 | (PF02780) (PF02779) | ||||
| 392499.Swit_2260 | PF00355 PF00848 | ||||
| 392499.Swit_2261 | PF00355 PF00848 | ||||
| 392499.Swit_2262 | (PF13669) | (ER) | |||
| 392499.Swit_2466 | + | (mitochondrial) | |||
| 392499.Swit_4196 | (PF01968) (PF05378) | ||||
| 392499.Swit_1961 | (PF01011) | (ER) | |||
| 392499.Swit_4083 | (PF01968) (PF05378) | ||||
| 392499.Swit_1105 | (PF01979) | (ER) | |||
| 392499.Swit_1617 | (PF04909) | (ER) | |||
| 392499.Swit_0966 | PF00355 PF00848 | ||||
| 392499.Swit_0744 | PF00355 PF00848 | ||||
| 392499.Swit_0962 | PF00355 PF00848 | ||||
| 392499.Swit_0989 | (PF07715) (PF00593) | ||||
| 392499.Swit_3056 | PF00355 PF00848 | ||||
| 392499.Swit_2270 | (PF00676) | ||||
| 392499.Swit_2872 | (PF02882) | ||||
| 392499.Swit_2472 | (PF14534) | ||||
| 392499.Swit_1590 | (PF02423) | ||||
| 392499.Swit_1596 | (PF00593) | ||||
| 392499.Swit_4225 | (PF02538) | ||||
| 392499.Swit_1606 | + | ||||
| 392499.Swit_3330 | PF13577 | ||||
| 392499.Swit_2069 | (PF04909) | ||||
| 392499.Swit_2064 | (PF02882) | ||||
| 392499.Swit_2806 | + | ||||
| 392499.Swit_0504 | PF00355 | ||||
| 392499.Swit_0501 | (PF14534) | ||||
| 392499.Swit_1749 | (PF04909) | ||||
| 392499.Swit_4152 | (PF14534) | ||||
| 392499.Swit_1132 | + | ||||
| 392499.Swit_4387 | PF13577 | ||||
| 392499.Swit_1632 | (PF05199) | ||||
| 392499.Swit_1631 | (PF07715) | ||||
| 392499.Swit_3293 | PF13577 | ||||
| 392499.Swit_2077 | (PF04909) | ||||
| 392499.Swit_2251 | PF00355 | ||||
| 392499.Swit_0534 | (PF13469) | ||||
| 392499.Swit_1753 | (PF04909) | ||||
| 392499.Swit_4144 | (PF02538) | ||||
| 392499.Swit_3369 | (PF07969) | ||||
| 392499.Swit_3285 | PF13577 | ||||
| 392499.Swit_0668 | (PF00676) | ||||
| 392499.Swit_3060 | (PF01557) | ||||
| 392499.Swit_3063 | (PF04909) | ||||
| 392499.Swit_3062 | PF00355 | ||||
| 392499.Swit_2008 | (PF13669) | ||||
| 392499.Swit_2390 | (PF05199) | ||||
| 392499.Swit_1802 | + | ||||
| 392499.Swit_1431 | PF13577 | ||||
| 392499.Swit_0386 | (PF04909) | ||||
| 392499.Swit_1650 | (PF01557) | ||||
| 392499.Swit_1978 | PF13577 | ||||
| 392499.Swit_3278 | PF13577 | ||||
| 392499.Swit_3276 | (PF13669) | ||||
| 392499.Swit_3277 | (PF05019) | ||||
| 392499.Swit_0893 | PF00355 | ||||
| 392499.Swit_3016 | (PF14534) | ||||
| 392499.Swit_0356 | (PF07969) | ||||
| 392499.Swit_0355 | PF13577 | ||||
| 392499.Swit_2013 | (PF07969) | ||||
| 392499.Swit_2521 | PF00355 | ||||
| 392499.Swit_1737 | PF13577 | ||||
| 392499.Swit_1735 | (PF07969) | ||||
| 392499.Swit_1739 | (PF05199) | ||||
| 392499.Swit_1738 | (PF07969) | ||||
| 392499.Swit_1396 | PF00355 | ||||
| 392499.Swit_4297 | PF00355 | ||||
| 392499.Swit_0287 | (PF13469) | ||||
| 392499.Swit_0288 | (PF13669) | ||||
| 392499.Swit_3266 | PF00355 | ||||
| 392499.Swit_3264 | PF00355 | ||||
| 392499.Swit_4588 | (PF13759) | ||||
| 392499.Swit_0603 | (PF01979) | ||||
| 392499.Swit_3396 | PF00355 | ||||
| 392499.Swit_3645 | (PF04909) | ||||
| 392499.Swit_3644 | (PF13669) | ||||
| 392499.Swit_3642 | (PF13469) | ||||
| 392499.Swit_2737 | (PF01979) | ||||
| 392499.Swit_3648 | (PF02538) | ||||
| 392499.Swit_2023 | (PF07969) | ||||
| 392499.Swit_2024 | (PF01011) | ||||
| 392499.Swit_4186 | PF13577 | ||||
| 392499.Swit_2286 | (PF01557) | ||||
| 392499.Swit_2285 | PF00355 | ||||
| 392499.Swit_2280 | PF13577 | ||||
| 392499.Swit_0476 | (PF02538) | ||||
| 392499.Swit_0474 | + | ||||
| 392499.Swit_1894 | (PF05199) | ||||
| 392499.Swit_1411 | (PF14534) | ||||
| 392499.Swit_0275 | (PF01979) | ||||
| 392499.Swit_0276 | (PF13669) | ||||
| 392499.Swit_2111 | (PF01557) | ||||
| 392499.Swit_0292 | PF13577 | ||||
| 392499.Swit_4242 | (PF05199) | ||||
| 392499.Swit_4247 | (PF01557) | ||||
| 392499.Swit_2034 | PF00355 | ||||
| 392499.Swit_2036 | (PF02538) | ||||
| 392499.Swit_2296 | PF13577 | ||||
| 392499.Swit_2502 | PF00355 | ||||
| 392499.Swit_1718 | (PF02538) | ||||
| 392499.Swit_1715 | (PF02423) | ||||
| 392499.Swit_1062 | (PF13759) | ||||
| 392499.Swit_1067 | PF00355 | ||||
| 392499.Swit_1064 | (PF05199) | ||||
| 392499.Swit_4030 | + | ||||
| 392499.Swit_0911 | (PF01557) | ||||
| 392499.Swit_0912 | (PF01557) | ||||
| 392499.Swit_4633 | (PF01979) | ||||
| 392499.Swit_4634 | (PF01979) | ||||
| 392499.Swit_4810 | (PF05199) | ||||
| 392499.Swit_0820 | (PF01557) | ||||
| 392499.Swit_3024 | PF00355 | ||||
| 392499.Swit_3022 | (PF01557) | ||||
| 392499.Swit_3759 | (PF07969) | ||||
| 392499.Swit_2378 | (PF05199) | ||||
| 392499.Swit_3082 | + | ||||
| 392499.Swit_4134 | (PF01557) | ||||
| 392499.Swit_1984 | PF13577 | ||||
| 392499.Swit_1986 | (PF16123) | ||||
| 392499.Swit_1987 | PF00355 | ||||
| 392499.Swit_0817 | (PF01979) | ||||
| 392499.Swit_1057 | (PF00676) | ||||
| 392499.Swit_1059 | (PF12973) | ||||
| 392499.Swit_4261 | (PF01557) | ||||
| 392499.Swit_0907 | (PF00593) | ||||
| 392499.Swit_0905 | (PF07715) | ||||
| 392499.Swit_4313 | (PF01557) | ||||
| 392499.Swit_0839 | (PF00676) | ||||
| 392499.Swit_0837 | PF00355 | ||||
| 392499.Swit_2984 | + | ||||
| 392499.Swit_4861 | PF00355 | ||||
| 392499.Swit_3348 | (PF05019) | ||||
| 392499.Swit_3345 | (PF07969) | ||||
| 392499.Swit_3763 | (PF02423) | ||||
| 392499.Swit_3768 | PF13577 | ||||
| 392499.Swit_0313 | (PF04909) | ||||
| 392499.Swit_2415 | (PF02423) | ||||
| 392499.Swit_0669 | + | ||||
| 392499.Swit_4128 | PF13577 | ||||
| 392499.Swit_1991 | + | ||||
| 392499.Swit_1040 | (PF00676) | ||||
| 392499.Swit_1683 | (PF04909) | ||||
| 392499.Swit_1681 | (PF01557) | ||||
| 392499.Swit_1687 | PF00355 | ||||
| 392499.Swit_1686 | PF00355 | ||||
| 392499.Swit_4278 | PF00355 | ||||
| 392499.Swit_4271 | (PF01557) | ||||
| 392499.Swit_4273 | PF00355 | ||||
| 392499.Swit_4277 | (PF05199) | ||||
| 392499.Swit_0339 | PF13577 | ||||
| 392499.Swit_4308 | (PF01557) | ||||
| 392499.Swit_0672 | PF00355 | ||||
| 392499.Swit_0675 | PF13577 | ||||
| 392499.Swit_3359 | PF13577 | ||||
| 392499.Swit_2881 | (PF01979) | ||||
| 392499.Swit_2084 | (PF02538) | ||||
| 392499.Swit_2087 | (PF07969) | ||||
| 392499.Swit_2310 | PF00355 | ||||
| 392499.Swit_2798 | (PF16123) | ||||
| 392499.Swit_2224 | (PF01979) | ||||
| 392499.Swit_1327 | + | ||||
| 392499.Swit_4208 | (PF01979) | ||||
| 392499.Swit_0811 | (PF12973) | ||||
| 392499.Swit_3368 | PF13577 | ||||
| 392499.Swit_4518 | (PF05199) | ||||
| 392499.Swit_0346 | (PF00676) | ||||
| 392499.Swit_0768 | (PF12973) | ||||
| 392499.Swit_1840 | + | ||||
| 392499.Swit_2091 | (PF07969) | ||||
| 392499.Swit_2308 | (PF04909) | ||||
| 392499.Swit_2302 | (PF01557) | ||||
| 392499.Swit_3142 | (PF13759) | ||||
| 392499.Swit_3141 | (PF13469) | ||||
| 392499.Swit_2239 | PF00355 | ||||
| 392499.Swit_0728 | (PF05199) | ||||
| 392499.Swit_1639 | (PF01557) | ||||
| 392499.Swit_3119 | (PF00450) | ||||
| 392499.Swit_3286 | (PF13469) | ||||
| 392499.Swit_1025 | PF13577 | ||||
| 392499.Swit_1537 | (PF01557) | ||||
| 392499.Swit_1717 | (PF01979) | ||||
| 392499.Swit_0312 | (PF07969) | ||||
| 392499.Swit_4670 | (PF05199) | ||||
| 392499.Swit_4506 | + | ||||
| 392499.Swit_0770 | (PF13669) | ||||
| 392499.Swit_0782 | (PF00676) | ||||
| 392499.Swit_4194 | (PF01979) | ||||
| 392499.Swit_1946 | PF13577 | ||||
| 392499.Swit_1786 | PF13577 | ||||
| 392499.Swit_1785 | (PF01979) | ||||
| 392499.Swit_1788 | (PF04909) | ||||
| 392499.Swit_1544 | PF07110 | ||||
| 392499.Swit_1541 | PF00355 | ||||
| 392499.Swit_1543 | PF00355 | ||||
| 392499.Swit_1549 | PF00355 | ||||
| 392499.Swit_3940 | + | ||||
| 392499.Swit_1166 | (PF02779) | ||||
| 392499.Swit_0307 | (PF13469) | ||||
| 392499.Swit_0306 | (PF13669) | ||||
| 392499.Swit_0940 | (PF02882) | ||||
| 392499.Swit_3419 | (PF00593) | ||||
| 392499.Swit_3413 | PF00355 | ||||
| 392499.Swit_3416 | PF00355 | ||||
| 392499.Swit_3307 | PF00355 | ||||
| 392499.Swit_3301 | (PF13469) | ||||
| 392499.Swit_4067 | + | ||||
| 392499.Swit_3095 | PF13577 | ||||
| 392499.Swit_3524 | (PF04909) | ||||
| 392499.Swit_3520 | (PF01557) | ||||
| 392499.Swit_3521 | (PF01557) | ||||
| 392499.Swit_2145 | (PF00676) | ||||
| 392499.Swit_1310 | + | ||||
| 392499.Swit_0742 | (PF01557) | ||||
| 392499.Swit_0963 | PF13577 | ||||
| 392499.Swit_1829 | PF00355 | ||||
| 392499.Swit_1556 | (PF14534) | ||||
| 392499.Swit_1552 | PF00355 | ||||
| 392499.Swit_1550 | PF00355 | ||||
| 392499.Swit_0373 | (PF13469) | ||||
| 392499.Swit_0379 | (PF05199) | ||||
| 392499.Swit_4237 | (PF12973) | ||||
| 392499.Swit_3409 | PF00355 | ||||
| 392499.Swit_3084 | (PF01557) | ||||
| 392499.Swit_3083 | (PF02423) | ||||
| 392499.Swit_2044 | (PF05199) | ||||
| 392499.Swit_0135 | + | ||||
| 392499.Swit_2460 | + | ||||
| 392499.Swit_1969 | (PF04909) | ||||
| 392499.Swit_1966 | (PF01979) | ||||
| 392499.Swit_1960 | (PF04909) | ||||
| 392499.Swit_1769 | PF13577 | ||||
| 392499.Swit_1765 | (PF04909) | ||||
| 392499.Swit_1767 | (PF04909) | ||||
| 392499.Swit_1566 | (PF02423) | ||||
| 392499.Swit_1582 | (PF05199) | ||||
| 392499.Swit_4081 | (PF01979) | ||||
| 392499.Swit_0366 | (PF05199) | ||||
| 392499.Swit_0969 | PF00355 | ||||
| 392499.Swit_0968 | PF13577 | ||||
| 392499.Swit_0745 | PF13577 | ||||
| 392499.Swit_0988 | (PF13816) | ||||
| 392499.Swit_3329 | PF13577 | ||||
| 392499.Swit_3322 | PF13577 | ||||
| 392499.Swit_3326 | PF13577 | ||||
| 392499.Swit_3325 | PF07110 | ||||
| 392499.Swit_3057 | PF13577 | ||||
| 392499.Swit_2053 | PF00355 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.1 (11/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.1 (11/10 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
