Effective results for Shewanella woodyi ATCC 51908 (eggnog40)

Summary

Number of putative secreted proteins: 104
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 104 proteins (5 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
392500.Swoo_3885(PF01773) (PF07662)ER
392500.Swoo_2675(PF01773) (PF07662)ER
392500.Swoo_3189(PF01773) (PF07662)ER
392500.Swoo_3041(PF05922) (PF02225)ER
392500.Swoo_1394(PF05922) (PF02225)ER; (ER)
392500.Swoo_4915(PF01773) (PF07662)ER
392500.Swoo_1500(PF05922) (PF02225)ER
392500.Swoo_3915(PF00629) (PF00801)ER
392500.Swoo_3551(PF01773) (PF07662)ER
392500.Swoo_2666(PF05922)ER
392500.Swoo_0968(PF01346)ER
392500.Swoo_3431(PF02225)ER
392500.Swoo_1102(PF01346)ER
392500.Swoo_2470(PF09619)ER
392500.Swoo_0647(PF00801)ER; (ER)
392500.Swoo_3193(PF00326)ER
392500.Swoo_1349(PF00245)ER
392500.Swoo_1126(PF00326)ER
392500.Swoo_1911(PF00801)ER
392500.Swoo_1350(PF00245)(ER); ER
392500.Swoo_0393(PF00326)ER
392500.Swoo_2392(PF13436)ER
392500.Swoo_4159(PF00326)ER
392500.Swoo_0529(PF00326)ER
392500.Swoo_3465(PF00326)ER
392500.Swoo_0844(PF00326)ER
392500.Swoo_2604(PF09317)ER
392500.Swoo_4565(PF00326)ER
392500.Swoo_0115(PF00801)(ER); ER
392500.Swoo_2286(PF10142)ER
392500.Swoo_2359(PF05922)ER
392500.Swoo_4827(PF00801)(ER); (mitochondrial)
392500.Swoo_0291(PF06468)ER
392500.Swoo_4763(PF00326)ER
392500.Swoo_3243(PF00326)ER
392500.Swoo_2996(PF00883)(mitochondrial)
392500.Swoo_2373(PF05922)ER
392500.Swoo_3767(PF02225)(ER)
392500.Swoo_3768(PF02225) (PF02010)(ER)
392500.Swoo_3769(PF00326)ER
392500.Swoo_4648(PF00801)ER
392500.Swoo_4483(PF00326)ER
392500.Swoo_2228(PF00326)ER
392500.Swoo_4136(PF00245)ER
392500.Swoo_2542(PF09317)ER
392500.Swoo_4261(PF00326)ER
392500.Swoo_2940(PF00326)ER
392500.Swoo_4490(PF00326)ER
392500.Swoo_3209(PF09619)ER
392500.Swoo_3205(PF09619)ER
392500.Swoo_1207(PF00245)mitochondrial
392500.Swoo_1208(PF00326)ER
392500.Swoo_0557(PF00801)ER
392500.Swoo_3941PF14845ER
392500.Swoo_4518(PF00326)ER
392500.Swoo_4475(PF01346)ER
392500.Swoo_4454(PF01346)(ER)
392500.Swoo_3188(PF00883)(plastid)
392500.Swoo_3429(PF00629) (PF00801)
392500.Swoo_2736(PF00326)(ER)
392500.Swoo_0211(PF13816)(mitochondrial)
392500.Swoo_2747(PF02225)(mitochondrial)
392500.Swoo_2953(PF00801)(plastid)
392500.Swoo_2096(PF03199) (PF03917)
392500.Swoo_2919PF00305
392500.Swoo_4445(PF08022)
392500.Swoo_2058PF01536
392500.Swoo_1556(PF14027)
392500.Swoo_0572(PF00849)
392500.Swoo_2907(PF00849)
392500.Swoo_3602(PF00883)
392500.Swoo_3670(PF08014)
392500.Swoo_0652(PF10509)
392500.Swoo_3722(PF00849)
392500.Swoo_3289(PF00849)
392500.Swoo_1751(PF00849)
392500.Swoo_2703(PF00849)
392500.Swoo_3873(PF00849)
392500.Swoo_4379(PF00332)
392500.Swoo_4415(PF07720)
392500.Swoo_2380(PF00849)
392500.Swoo_4380(PF00332)
392500.Swoo_3730(PF00849)
392500.Swoo_2033(PF00849)
392500.Swoo_1076(PF00883)
392500.Swoo_0913(PF00849)
392500.Swoo_0915(PF08014)
392500.Swoo_0917(PF00849)
392500.Swoo_0598(PF16983)
392500.Swoo_3580(PF01346)
392500.Swoo_1504(PF09317)
392500.Swoo_0582(PF06468)
392500.Swoo_2085(PF10509)
392500.Swoo_1049(PF00849)
392500.Swoo_2318PF00305
392500.Swoo_3662(PF10509)
392500.Swoo_4781(PF00849)
392500.Swoo_3796(PF00883)
392500.Swoo_2449(PF14027)
392500.Swoo_3153(PF00849)
392500.Swoo_0942(PF00849)
392500.Swoo_3411(PF00849)
392500.Swoo_3415PF00305
392500.Swoo_3638(PF08022)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.875 (15/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================