Effective results for Gramella forsetii KT0803 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 45 proteins (4 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411154.GFO_3289(PF03321)mitochondrial; (mitochondrial)
411154.GFO_0711(PF10988)(ER)
411154.GFO_3589(PF08309)ER
411154.GFO_1858(PF10988)ER
411154.GFO_1505(PF09295)mitochondrial
411154.GFO_0301(PF09949)(mitochondrial)
411154.GFO_3494(PF08695)(ER)
411154.GFO_0336(PF10988)ER
411154.GFO_2307(PF08309)ER
411154.GFO_0659(PF02494)ER
411154.GFO_2656(PF10988)ER
411154.GFO_3427(PF08309)ER
411154.GFO_2927(PF16313)ER
411154.GFO_0989(PF10988)ER
411154.GFO_3507PF04733ER
411154.GFO_1586PF11074(mitochondrial)
411154.GFO_0755(PF01204)ER
411154.GFO_1801(PF16313)ER
411154.GFO_0374(PF02494)ER
411154.GFO_1157(PF08787)mitochondrial
411154.GFO_1156(PF08787)(mitochondrial); mitochondrial
411154.GFO_2059(PF01400)ER
411154.GFO_2058(PF01400)ER
411154.GFO_1148(PF08787)ER
411154.GFO_1145(PF08787)ER
411154.GFO_1736(PF01204)ER
411154.GFO_0393(PF02494)ER
411154.GFO_0266(PF16313)ER; (ER)
411154.GFO_2705(PF12862)ER
411154.GFO_2577PF11074(mitochondrial)
411154.GFO_0242(PF03321)(plastid)
411154.GFO_2496(PF13392) (PF00847)
411154.GFO_0774(PF13668)(plastid)
411154.GFO_1847(PF13668)
411154.GFO_1846(PF13668)
411154.GFO_0001(PF08892)
411154.GFO_1181(PF01204)
411154.GFO_2213(PF03321)
411154.GFO_0864PF08513
411154.GFO_0410(PF13392)
411154.GFO_1924(PF08892)
411154.GFO_1036(PF09949)
411154.GFO_0773(PF13668)
411154.GFO_2427(PF13392)
411154.GFO_1836(PF02494)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================