Effective results for Desulfovibrio piger ATCC 29098 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411464.DESPIG_02263PF01591mitochondrial
411464.DESPIG_02187(PF09825)ER; (ER)
411464.DESPIG_03160(PF01174)(mitochondrial)
411464.DESPIG_02092PF13513(mitochondrial)
411464.DESPIG_00639(PF12437)
411464.DESPIG_02129(PF02732)
411464.DESPIG_00762(PF13597)not used
411464.DESPIG_01484(PF01174)not used
411464.DESPIG_03094(PF06968)
411464.DESPIG_01492(PF01174)not used
411464.DESPIG_00325(PF06968)
411464.DESPIG_01940(PF02732)
411464.DESPIG_00920(PF05693)
411464.DESPIG_00805(PF12437)
411464.DESPIG_01515(PF02516)
411464.DESPIG_01478(PF06968)
411464.DESPIG_01473(PF05932)
411464.DESPIG_01879(PF05932)
411464.DESPIG_02757(PF06968)
411464.DESPIG_00135(PF05932)
411464.DESPIG_02217(PF05932)
411464.DESPIG_00246(PF13597)
411464.DESPIG_00247(PF13597)not used
411464.DESPIG_00855(PF13597)not used
411464.DESPIG_03139(PF13597)
411464.DESPIG_03134(PF13597)
411464.DESPIG_00688(PF05932)
411464.DESPIG_01795(PF05932)
411464.DESPIG_02539(PF05932)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================