Effective results for Lactococcus garvieae Lg2 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 26 proteins (9 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
420890.LCGL_1663PF05257(mitochondrial)
420890.LCGL_1238(PF03960)mitochondrial; (mitochondrial)
420890.LCGL_1366(PF03960)(mitochondrial)
420890.LCGL_0960(PF03960)(mitochondrial)
420890.LCGL_1929PF05257ER
420890.LCGL_1930PF05257ER
420890.LCGL_1401PF05257ER
420890.LCGL_1091(PF07517)(mitochondrial)
420890.LCGL_0679PF05257ER
420890.LCGL_1269(PF03960)(mitochondrial)
420890.LCGL_0581(PF03960)(mitochondrial)
420890.LCGL_0364(PF03960)(mitochondrial)
420890.LCGL_1441(PF03960)
420890.LCGL_0841(PF03306)
420890.LCGL_0335(PF03960)
420890.LCGL_1068(PF03306)
420890.LCGL_1369PF05257
420890.LCGL_0544(PF03960)
420890.LCGL_1103PF05257
420890.LCGL_1438(PF03960)
420890.LCGL_1113PF05257
420890.LCGL_0062(PF07517)
420890.LCGL_0423(PF03960)
420890.LCGL_0861(PF03960)
420890.LCGL_1090(PF07517)
420890.LCGL_0878PF05257

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================