Metamenu

Effective results for Clostridium botulinum NCTC 2916 (eggnog40)

Summary

Number of putative secreted proteins: 120
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 39 eukaryotic-like domains, contained in 120 proteins (14 high, 106 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
445335.CBN_1666(PF12724)(mitochondrial)
445335.CBN_1275(PF01373)ER
445335.CBN_0928(PF12821)ER
445335.CBN_1094(PF12724)ER
445335.CBN_1092(PF06695)ER
445335.CBN_2200(PF17032)(mitochondrial); mitochondrial
445335.CBN_0230(PF09752)(ER)
445335.CBN_3481(PF06445)(mitochondrial)
445335.CBN_3660(PF13353)(mitochondrial)
445335.CBN_3478(PF00163)(mitochondrial)
445335.CBN_A0048(PF02690)ER
445335.CBN_1388PF02893ER
445335.CBN_0835(PF06695)ER
445335.CBN_3158(PF01520)ER
445335.CBN_0491(PF12821)ER
445335.CBN_1579(PF01520)ER
445335.CBN_2578(PF12821)ER
445335.CBN_2284(PF06445)mitochondrial
445335.CBN_3340(PF01171)mitochondrial; (mitochondrial)
445335.CBN_A0039(PF02690)ER
445335.CBN_1831PF16472mitochondrial; (mitochondrial)
445335.CBN_1832PF16472ER
445335.CBN_A0016(PF02690)ER
445335.CBN_2745PF02344ER
445335.CBN_3518(PF01520)ER
445335.CBN_3519(PF02690)ER
445335.CBN_2253(PF14566)ER
445335.CBN_1670(PF09370)(mitochondrial)
445335.CBN_0412PF16472ER
445335.CBN_2792(PF16760)ER
445335.CBN_2797(PF08329)ER
445335.CBN_2796(PF08329)(ER)
445335.CBN_3520PF00380mitochondrial
445335.CBN_3528(PF00163)mitochondrial
445335.CBN_2883(PF03266)(plastid)
445335.CBN_1683(PF00689)
445335.CBN_0649(PF14526)
445335.CBN_0790(PF06445)
445335.CBN_1879(PF02906)
445335.CBN_1896(PF02906)
445335.CBN_1097(PF12724)
445335.CBN_1861(PF09861)
445335.CBN_2847(PF13353)
445335.CBN_0131(PF01633)
445335.CBN_3642(PF12646)
445335.CBN_1463(PF01520)
445335.CBN_0129(PF01633)
445335.CBN_1088(PF06445)
445335.CBN_A0053(PF02127)
445335.CBN_0123(PF13353)
445335.CBN_3241(PF01869)
445335.CBN_1526(PF12513)
445335.CBN_2213(PF14526)
445335.CBN_3110(PF13353)
445335.CBN_1877(PF02906)
445335.CBN_0112(PF13353)
445335.CBN_2048(PF13353)
445335.CBN_1404(PF01520)
445335.CBN_1405(PF00454)
445335.CBN_2227(PF01869)
445335.CBN_2221(PF12638)
445335.CBN_3058(PF01520)
445335.CBN_3299(PF03243)
445335.CBN_3298(PF03243)not used
445335.CBN_0756(PF06445)
445335.CBN_0377PF03984
445335.CBN_0572(PF00689)
445335.CBN_3260(PF13353)
445335.CBN_2237(PF01869)
445335.CBN_3288(PF01869)
445335.CBN_0369(PF01171)
445335.CBN_A0040PF00380
445335.CBN_3609(PF01171)
445335.CBN_0821PF06597
445335.CBN_0820PF06597
445335.CBN_0824PF06597
445335.CBN_2084(PF09861)
445335.CBN_2087(PF00302)
445335.CBN_0772(PF06445)
445335.CBN_0555(PF13353)
445335.CBN_3639(PF13353)
445335.CBN_3632(PF02906)
445335.CBN_0010(PF07892)
445335.CBN_0011(PF02403)
445335.CBN_0946(PF14526)
445335.CBN_3157(PF01520)
445335.CBN_0542(PF02403)
445335.CBN_0841(PF14526)
445335.CBN_3388(PF13353)
445335.CBN_0627(PF13353)
445335.CBN_1149(PF07892)
445335.CBN_2964(PF01520)
445335.CBN_1927(PF01520)
445335.CBN_0032(PF12724)
445335.CBN_3393(PF02127)
445335.CBN_3414(PF01869)
445335.CBN_3412PF03984
445335.CBN_2173(PF06445)
445335.CBN_3345(PF02906)
445335.CBN_2611(PF01991)
445335.CBN_2619(PF00689)
445335.CBN_0183(PF01171)
445335.CBN_2166(PF13353)
445335.CBN_2586(PF02127)
445335.CBN_3359(PF17032)
445335.CBN_2027(PF00689)
445335.CBN_3216(PF01869)
445335.CBN_0665(PF00302)
445335.CBN_A0014PF00380
445335.CBN_2747PF16472
445335.CBN_1690(PF14526)
445335.CBN_1693(PF01869)
445335.CBN_3334(PF01869)
445335.CBN_1077(PF09861)
445335.CBN_1073(PF13353)
445335.CBN_1675(PF00689)
445335.CBN_1672(PF09370)
445335.CBN_1206(PF01869)
445335.CBN_2860(PF00689)
445335.CBN_3230(PF13353)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================