Effective results for Clostridium botulinum C str. Eklund (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 31 proteins (5 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
445337.CBC_0528(PF13205) (PF08367)ER
445337.CBC_0109(PF01477) (PF00882)(ER); ER
445337.CBC_A0660(PF09992)(ER)
445337.CBC_0527(PF09992)ER
445337.CBC_A0851(PF00163)mitochondrial
445337.CBC_A0593(PF13205)ER
445337.CBC_A1048(PF13205)ER
445337.CBC_A1689(PF13205)ER
445337.CBC_0281(PF13205)ER
445337.CBC_0897(PF09992)(ER)
445337.CBC_0926(PF00163)mitochondrial
445337.CBC_A1024(PF00882)mitochondrial
445337.CBC_0272PF12260(mitochondrial); mitochondrial
445337.CBC_A1544(PF09992)(mitochondrial)
445337.CBC_A1178(PF13205)ER
445337.CBC_A1585PF00068ER
445337.CBC_0975(PF07892)(mitochondrial)
445337.CBC_A1750PF05183
445337.CBC_A1659(PF00622)
445337.CBC_0838(PF07892)
445337.CBC_0235(PF09370)
445337.CBC_0237(PF09370)
445337.CBC_0799(PF01633)
445337.CBC_0813(PF01633)
445337.CBC_1072(PF06777)
445337.CBC_A1665PF00688
445337.CBC_A1543(PF09992)not used
445337.CBC_A1802PF07453
445337.CBC_0889(PF12646)
445337.CBC_A0999(PF08367)
445337.CBC_A1018(PF01991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================