Effective results for Marinomonas posidonica IVIA-Po-181 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 23 proteins (3 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
491952.Mar181_0688(PF00909)(ER)
491952.Mar181_2509(PF00909)ER; (ER)
491952.Mar181_0331(PF00909)ER
491952.Mar181_1121PF01283ER
491952.Mar181_2225(PF13332)mitochondrial; (mitochondrial)
491952.Mar181_0534(PF00909)(ER)
491952.Mar181_1813(PF13332)mitochondrial; (mitochondrial)
491952.Mar181_1819(PF13332)mitochondrial; (mitochondrial)
491952.Mar181_0771(PF05686)(mitochondrial)
491952.Mar181_0860(PF07386)ER
491952.Mar181_1948PF15753ER
491952.Mar181_2151(PF03662)(mitochondrial)
491952.Mar181_0486(PF04724)(ER)
491952.Mar181_1515(PF07386)ER
491952.Mar181_3112(PF00909)ER
491952.Mar181_2211(PF07386)
491952.Mar181_1564(PF12038)
491952.Mar181_3082(PF00909)
491952.Mar181_2149(PF00026)
491952.Mar181_0485PF11913
491952.Mar181_0482(PF04724)
491952.Mar181_1314(PF03538)
491952.Mar181_1315(PF12255)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================