Effective results for Chloroherpeton thalassium ATCC 35110 (eggnog40)

Summary

Number of putative secreted proteins: 54
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 54 proteins (7 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
517418.Ctha_2147(PF16889)ER
517418.Ctha_0628(PF03209)ER; (ER)
517418.Ctha_2402(PF03209)ER
517418.Ctha_1213(PF16889)(mitochondrial)
517418.Ctha_0111(PF13394)(mitochondrial)
517418.Ctha_0340PF10300mitochondrial
517418.Ctha_0002(PF03647)ER
517418.Ctha_2441(PF02514)mitochondrial; (mitochondrial)
517418.Ctha_1674PF00688ER
517418.Ctha_2273PF04831ER
517418.Ctha_2022(PF16889)mitochondrial
517418.Ctha_1905PF05176ER
517418.Ctha_1698(PF11965) (PF02514)
517418.Ctha_0606(PF12159) (PF10693)
517418.Ctha_2442(PF01078)(ER)
517418.Ctha_1285(PF11965) (PF02514)
517418.Ctha_1287(PF11965) (PF02514)
517418.Ctha_1032(PF00148)
517418.Ctha_1031(PF00148)
517418.Ctha_1030(PF00148)
517418.Ctha_2360(PF00025)
517418.Ctha_2553(PF16114)
517418.Ctha_0303(PF01078)
517418.Ctha_2413(PF13394)
517418.Ctha_1372(PF00148)
517418.Ctha_1373(PF00148)
517418.Ctha_0817(PF00148)
517418.Ctha_0103(PF13394)
517418.Ctha_1188(PF02943)
517418.Ctha_0691(PF16095)
517418.Ctha_0900(PF13281)
517418.Ctha_0124(PF13394)
517418.Ctha_2074(PF01078)
517418.Ctha_2073(PF01078)
517418.Ctha_2672(PF03901)
517418.Ctha_1246(PF13394)
517418.Ctha_1717(PF04423)
517418.Ctha_2445(PF02514)
517418.Ctha_2443(PF01078)
517418.Ctha_2069(PF04765)
517418.Ctha_1892PF07082
517418.Ctha_1255PF07082
517418.Ctha_2654(PF03209)
517418.Ctha_1550(PF13394)
517418.Ctha_2394(PF13394)
517418.Ctha_1294(PF08662)
517418.Ctha_1346PF15711
517418.Ctha_0400(PF00025)
517418.Ctha_0695(PF00847)
517418.Ctha_1833(PF00148)
517418.Ctha_1831(PF00148)
517418.Ctha_0198(PF00148)
517418.Ctha_1028(PF13394)
517418.Ctha_1029(PF00148)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================