Effective results for Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
521098.Aaci_2838				(PF01828)	ER
521098.Aaci_2168				(PF02681)	ER
521098.Aaci_2450				(PF01828)	mitochondrial
521098.Aaci_0776				(PF09992)	ER
521098.Aaci_0230				PF08389	ER; (ER)
521098.Aaci_0615				(PF06094)	(plastid)
521098.Aaci_1201				(PF06094)	plastid
521098.Aaci_0854				(PF09992)	(mitochondrial)
521098.Aaci_1143				(PF06094)
521098.Aaci_0431				(PF13921)
521098.Aaci_0547				(PF06094)
521098.Aaci_1440				(PF06094)
521098.Aaci_1099				(PF12843)
521098.Aaci_1164				(PF09992)
521098.Aaci_0614				(PF12224)
521098.Aaci_0296				(PF08950)
521098.Aaci_1500				(PF12843)
521098.Aaci_1200				(PF12224)
521098.Aaci_1301				(PF02679)
521098.Aaci_0498				(PF12843)
521098.Aaci_2433				(PF02679)
521098.Aaci_0665				(PF09992)
521098.Aaci_1126				(PF06094)
521098.Aaci_1264				(PF13921)
521098.Aaci_1603				(PF09992)
521098.Aaci_1046				(PF02681)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================