Effective results for Corynebacterium striatum ATCC 6940 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 20 proteins (8 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525268.HMPREF0308_2002(PF08310)(ER); (mitochondrial)
525268.HMPREF0308_0351(PF08310)ER; (ER)
525268.HMPREF0308_2239PF09683ER
525268.HMPREF0308_1981(PF08310)(mitochondrial)
525268.HMPREF0308_0911(PF08310)ER
525268.HMPREF0308_2251(PF08310)ER
525268.HMPREF0308_1609PF09683ER; (ER)
525268.HMPREF0308_1354(PF08354)(plastid)
525268.HMPREF0308_1741PF01490
525268.HMPREF0308_1373PF08213not used
525268.HMPREF0308_0400(PF01195)
525268.HMPREF0308_1307(PF14078)
525268.HMPREF0308_1780(PF14078)
525268.HMPREF0308_2510PF09683
525268.HMPREF0308_2391(PF05495)
525268.HMPREF0308_0394(PF01195)
525268.HMPREF0308_0254(PF08354)
525268.HMPREF0308_1728PF01490
525268.HMPREF0308_1759PF01490
525268.HMPREF0308_1837PF01490

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================