Metamenu

Effective results for Pirellula staleyi DSM 6068 (eggnog40)

Summary

Number of putative secreted proteins: 269
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 50 eukaryotic-like domains, contained in 269 proteins (70 high, 199 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
530564.Psta_2956(PF06439) PF08305 (PF06283)ER
530564.Psta_2725(PF13365) (PF13180)ER
530564.Psta_2724(PF13365) (PF13180)ER
530564.Psta_2723(PF13365) (PF13180)(ER)
530564.Psta_4602(PF16347) (PF00884)ER
530564.Psta_4105(PF16347) (PF00884)ER
530564.Psta_2035(PF13646) PF13360mitochondrial
530564.Psta_3322(PF01436) (PF13905)ER
530564.Psta_3206(PF13365) (PF13180)ER
530564.Psta_0406(PF13768) (PF08487)mitochondrial
530564.Psta_3232(PF13365) (PF13180)ER
530564.Psta_1173(PF16347) (PF00884)ER
530564.Psta_4203(PF16347) (PF00884)ER
530564.Psta_2160(PF01436) (PF06283)ER
530564.Psta_2163(PF13365) (PF13180)(mitochondrial)
530564.Psta_2698(PF13646) PF13360ER; (ER)
530564.Psta_3916(PF13365) (PF13180)ER
530564.Psta_3231(PF13365) (PF13180)ER
530564.Psta_3724(PF16347) (PF00884)(mitochondrial)
530564.Psta_4390(PF16347) (PF00884)ER
530564.Psta_3926(PF13365) (PF13180)ER
530564.Psta_3927(PF13365) (PF13180)mitochondrial
530564.Psta_2642(PF13365) (PF13180)ER
530564.Psta_1282(PF16871)ER
530564.Psta_2654(PF13768)ER
530564.Psta_2273(PF07691)ER
530564.Psta_0394(PF00884)ER
530564.Psta_0395(PF10162)ER
530564.Psta_1677PF13360ER
530564.Psta_1678PF13360ER
530564.Psta_3381(PF03092)(ER)
530564.Psta_0384(PF13646)(mitochondrial)
530564.Psta_1668PF13360ER
530564.Psta_0722PF13360ER
530564.Psta_2868(PF13646)ER
530564.Psta_1715(PF04734)(ER); (mitochondrial)
530564.Psta_3242PF13360ER
530564.Psta_3244(PF03629)ER
530564.Psta_3656(PF12006)ER
530564.Psta_2900(PF00884)ER
530564.Psta_3096(PF05448)ER
530564.Psta_3476PF08305mitochondrial; (mitochondrial)
530564.Psta_3473(PF02424)ER
530564.Psta_1482(PF13905)(mitochondrial)
530564.Psta_1481(PF13905)ER
530564.Psta_1650PF13360ER
530564.Psta_2452(PF13365)ER
530564.Psta_2909PF08305ER
530564.Psta_3646(PF00884)ER
530564.Psta_3081PF13360mitochondrial
530564.Psta_4521PF13360ER
530564.Psta_2338(PF04734)ER
530564.Psta_1645(PF13905)ER
530564.Psta_3883(PF07691)ER
530564.Psta_3864(PF06283)ER
530564.Psta_1820(PF00884)ER
530564.Psta_3260PF07787(ER); ER
530564.Psta_3677(PF13646)(ER); ER
530564.Psta_3389PF13360ER
530564.Psta_0190(PF00884)ER
530564.Psta_2324(PF13519)ER
530564.Psta_4461(PF13365)(mitochondrial)
530564.Psta_3857PF13360ER
530564.Psta_1741PF13360ER
530564.Psta_3066PF13360ER
530564.Psta_3192(PF13180)ER
530564.Psta_3681(PF00884)mitochondrial
530564.Psta_2131(PF13519)ER
530564.Psta_1217(PF13646)ER
530564.Psta_3538(PF13646)ER
530564.Psta_4506(PF00884)ER
530564.Psta_4502PF13360ER
530564.Psta_2312(PF06439)ER
530564.Psta_2310(PF13646)ER
530564.Psta_4258(PF00884)ER
530564.Psta_0571PF07343ER
530564.Psta_2127(PF01436)(mitochondrial)
530564.Psta_2128(PF13519)ER
530564.Psta_1111(PF02424)ER
530564.Psta_0374(PF06439)ER
530564.Psta_2016(PF13365)ER
530564.Psta_1370(PF06439)ER
530564.Psta_0797PF13360ER
530564.Psta_4312(PF06439)ER
530564.Psta_1561(PF13646)(ER)
530564.Psta_2942(PF13646)ER
530564.Psta_0895(PF13646)ER
530564.Psta_0894(PF00884)ER
530564.Psta_0893(PF13365)ER
530564.Psta_1947(PF07876)ER
530564.Psta_1344(PF06439)ER
530564.Psta_2542PF13360ER
530564.Psta_2544(PF00884)ER
530564.Psta_2150PF13360ER
530564.Psta_1167(PF00884)(mitochondrial)
530564.Psta_1162(PF00884)ER
530564.Psta_1168(PF03629)ER
530564.Psta_1307(PF13646)(ER)
530564.Psta_4234(PF05448)ER
530564.Psta_4300(PF13180)ER
530564.Psta_1772PF05641ER
530564.Psta_4126(PF16347) (PF00884)(plastid)
530564.Psta_4125PF13243(mitochondrial)
530564.Psta_0553(PF13180)ER
530564.Psta_3959(PF00884)ER
530564.Psta_3958(PF00884)ER
530564.Psta_3229PF08305ER
530564.Psta_2979PF13360ER
530564.Psta_1172(PF06439)ER
530564.Psta_1178(PF03629)ER
530564.Psta_3568(PF06439)ER
530564.Psta_4423(PF03629)ER
530564.Psta_4426(PF05448)ER
530564.Psta_2215(PF01436)ER
530564.Psta_1404(PF13180)ER; (ER)
530564.Psta_3817(PF06439)ER
530564.Psta_3818PF13360ER
530564.Psta_4118PF13360(ER)
530564.Psta_3964(PF00884)ER
530564.Psta_3963(PF00884)ER
530564.Psta_3960(PF00884)ER
530564.Psta_0545(PF03901)ER
530564.Psta_0542(PF06439)ER
530564.Psta_0945PF13243ER
530564.Psta_3367PF13360ER
530564.Psta_2568(PF06283)ER
530564.Psta_2567(PF06283)ER
530564.Psta_3793(PF13180)(mitochondrial); plastid
530564.Psta_3792(PF06439)ER
530564.Psta_2682(PF00884)ER
530564.Psta_1326(PF00884)ER
530564.Psta_1325(PF00884)ER
530564.Psta_1329(PF13180)ER
530564.Psta_1431(PF06283)ER
530564.Psta_1559(PF13646)ER
530564.Psta_4104(PF00884)ER
530564.Psta_3375(PF13365)(mitochondrial)
530564.Psta_3016(PF02424)ER
530564.Psta_2519(PF03629)ER
530564.Psta_2423PF13360ER
530564.Psta_2425(PF06439)ER
530564.Psta_2162(PF13180)ER
530564.Psta_2699(PF13519)ER
530564.Psta_4592(PF06283)mitochondrial
530564.Psta_4772(PF13180)ER
530564.Psta_1634PF13360ER
530564.Psta_1858PF13360ER
530564.Psta_0855(PF06439)ER
530564.Psta_3172(PF04450)ER
530564.Psta_2754(PF03629)ER
530564.Psta_2910PF00432 PF13243(mitochondrial)
530564.Psta_2914(PF13519)ER
530564.Psta_3759(PF06439)(mitochondrial)
530564.Psta_2917PF13360(ER)
530564.Psta_1459(PF00884)(ER)
530564.Psta_1456(PF00884)ER
530564.Psta_2538PF13243mitochondrial
530564.Psta_0867(PF13646)ER
530564.Psta_0862(PF09752)ER
530564.Psta_3230(PF13365)ER
530564.Psta_4488(PF07876)ER
530564.Psta_4373(PF06439)ER
530564.Psta_0478(PF13519)ER
530564.Psta_0873PF13360(ER)
530564.Psta_2735PF13360mitochondrial
530564.Psta_3734(PF02230)(ER)
530564.Psta_2399PF13360(mitochondrial)
530564.Psta_4366PF00432(mitochondrial)
530564.Psta_0649(PF07876)ER
530564.Psta_2467PF13243ER
530564.Psta_2463(PF06439)ER
530564.Psta_1046(PF02230)(plastid)
530564.Psta_3259PF07787(ER)
530564.Psta_1342(PF00059) (PF07691)
530564.Psta_4464(PF13365)(plastid)
530564.Psta_4463(PF13365)(plastid)
530564.Psta_2491(PF07691)(ER)
530564.Psta_1946(PF13646) (PF06283)
530564.Psta_1169(PF00884)(ER)
530564.Psta_4238(PF06439)(mitochondrial)
530564.Psta_0134PF13360(mitochondrial)
530564.Psta_1895(PF13768) (PF08487)
530564.Psta_3797(PF13365) (PF13180)
530564.Psta_2697(PF13646) PF13360
530564.Psta_1852(PF13646) (PF13365)
530564.Psta_3248(PF13365) (PF13180)
530564.Psta_1847(PF14237)(mitochondrial)
530564.Psta_0002PF13360(mitochondrial)
530564.Psta_0904(PF07726)plastid
530564.Psta_1472(PF13365) (PF13180)
530564.Psta_2884PF00432(mitochondrial)
530564.Psta_2722PF08305
530564.Psta_0285(PF13365)
530564.Psta_3418(PF13365)
530564.Psta_2278PF08305
530564.Psta_1709(PF14237)
530564.Psta_1924(PF12899)
530564.Psta_2479(PF13646)
530564.Psta_2719PF00432
530564.Psta_2714PF13360
530564.Psta_3400(PF13180)
530564.Psta_2280(PF07691)
530564.Psta_2702(PF13768)
530564.Psta_4536(PF06283)
530564.Psta_0286(PF13365)
530564.Psta_4280PF08305
530564.Psta_0754PF13360
530564.Psta_1729PF00432
530564.Psta_2908(PF10143)
530564.Psta_1909PF08305
530564.Psta_3643(PF07876)
530564.Psta_1014(PF01847)
530564.Psta_1012(PF14792)
530564.Psta_4273(PF14237)
530564.Psta_4183(PF13519)
530564.Psta_1738PF13243
530564.Psta_1821(PF00884)
530564.Psta_1919(PF16912)
530564.Psta_1917(PF02230)
530564.Psta_3187(PF16912)
530564.Psta_0359(PF05189)
530564.Psta_3525(PF13646)
530564.Psta_2320(PF07726)
530564.Psta_2326PF13360
530564.Psta_4643PF00432
530564.Psta_0174PF13243
530564.Psta_3323(PF07726)
530564.Psta_1366(PF06439)
530564.Psta_1360PF13243
530564.Psta_3748(PF04455)
530564.Psta_3996(PF07726)
530564.Psta_0572(PF13582)
530564.Psta_2636PF13360
530564.Psta_2129(PF07726)
530564.Psta_1117(PF14237)
530564.Psta_4459(PF13365)
530564.Psta_0960PF09239
530564.Psta_4304(PF10143)
530564.Psta_1579(PF07726)
530564.Psta_3957(PF06439)
530564.Psta_3222(PF07726)
530564.Psta_0958PF04406
530564.Psta_3788(PF13646)
530564.Psta_3563(PF13180)
530564.Psta_4115(PF07726)
530564.Psta_3814(PF12006)
530564.Psta_3486(PF03629)
530564.Psta_2192(PF13365)
530564.Psta_1557(PF07726)
530564.Psta_4106(PF00884)
530564.Psta_4598(PF12576)
530564.Psta_4175PF13360
530564.Psta_4001(PF02230)
530564.Psta_0699PF08305
530564.Psta_2916(PF07726)
530564.Psta_0073(PF02424)
530564.Psta_1625(PF13519)
530564.Psta_2701(PF07726)
530564.Psta_3615(PF13646)
530564.Psta_3110(PF02424)
530564.Psta_1293(PF00884)
530564.Psta_0278(PF00884)
530564.Psta_3428(PF02171)
530564.Psta_1473PF13360
530564.Psta_1270PF13360
530564.Psta_0012(PF13365)
530564.Psta_4145PF01398
530564.Psta_4144PF00179
530564.Psta_4148PF00179

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 4.625 (37/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================