Metamenu

Effective results for Prevotella copri DSM 18205 (eggnog40)

Summary

Number of putative secreted proteins: 184
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 184 proteins (106 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537011.PREVCOP_03886PF08011 PF09820(mitochondrial)
537011.PREVCOP_04698PF08011 PF09820(mitochondrial)
537011.PREVCOP_04697PF08011 PF09820(mitochondrial)
537011.PREVCOP_06287PF13173(mitochondrial)
537011.PREVCOP_03504(PF13306)ER
537011.PREVCOP_04356PF13173mitochondrial
537011.PREVCOP_06044PF13173mitochondrial; (mitochondrial)
537011.PREVCOP_06716(PF03051)ER
537011.PREVCOP_03678(PF04851)(ER)
537011.PREVCOP_03609(PF03092)ER
537011.PREVCOP_04359(PF15979)(ER)
537011.PREVCOP_05527PF13173mitochondrial
537011.PREVCOP_06771PF13173(mitochondrial)
537011.PREVCOP_05737PF13173mitochondrial
537011.PREVCOP_06344(PF00686)(mitochondrial)
537011.PREVCOP_03823(PF13151)mitochondrial; (mitochondrial)
537011.PREVCOP_04225PF13173(mitochondrial)
537011.PREVCOP_05314PF13173mitochondrial
537011.PREVCOP_04671(PF03051)ER
537011.PREVCOP_05334PF08011 PF09820(mitochondrial)
537011.PREVCOP_03789(PF13306)ER
537011.PREVCOP_03787(PF13306)ER
537011.PREVCOP_06493(PF15979)ER
537011.PREVCOP_04632(PF13306)ER
537011.PREVCOP_06062(PF13306)ER
537011.PREVCOP_04333(PF14771)ER
537011.PREVCOP_06058PF13173mitochondrial; (mitochondrial)
537011.PREVCOP_06294(PF13306)ER
537011.PREVCOP_06295PF01637mitochondrial; (mitochondrial)
537011.PREVCOP_04613PF13173mitochondrial
537011.PREVCOP_05561(PF03051)ER
537011.PREVCOP_06459PF08011 PF09820
537011.PREVCOP_06457PF08011 PF09820
537011.PREVCOP_04367PF13148 (PF08707)
537011.PREVCOP_04563(PF05970) PF02689
537011.PREVCOP_05847PF08011 PF09820
537011.PREVCOP_04009PF08011 PF09820
537011.PREVCOP_06550(PF05970) PF02689
537011.PREVCOP_05875PF13173(mitochondrial)
537011.PREVCOP_04079PF08011 PF09820
537011.PREVCOP_06204(PF13306)(plastid)
537011.PREVCOP_05424PF08011 PF09820
537011.PREVCOP_06307(PF00165)(mitochondrial); not used
537011.PREVCOP_03559(PF01715)mitochondrial
537011.PREVCOP_04089PF08011 PF09820
537011.PREVCOP_04321PF08011 PF09820
537011.PREVCOP_05346PF13173(mitochondrial)
537011.PREVCOP_06485PF08011 PF09820
537011.PREVCOP_04625PF08011 PF09820
537011.PREVCOP_05598PF08011 PF09820
537011.PREVCOP_05377PF13173(mitochondrial)
537011.PREVCOP_04987PF01637(plastid)
537011.PREVCOP_06612(PF10544) (PF04851)
537011.PREVCOP_04961PF13173(mitochondrial)
537011.PREVCOP_06460PF08011 PF09820
537011.PREVCOP_06591PF13173
537011.PREVCOP_06735PF01610not used
537011.PREVCOP_06739(PF03235)
537011.PREVCOP_06285PF13173
537011.PREVCOP_04973PF09820
537011.PREVCOP_04972PF08011not used
537011.PREVCOP_05693PF06250
537011.PREVCOP_05824(PF08707)
537011.PREVCOP_05825PF13148
537011.PREVCOP_04420PF01637
537011.PREVCOP_04350(PF04326)
537011.PREVCOP_04605(PF04851)
537011.PREVCOP_04514(PF01715)
537011.PREVCOP_04775(PF04851)
537011.PREVCOP_05174PF01610
537011.PREVCOP_05489(PF14512)
537011.PREVCOP_06853(PF01555)
537011.PREVCOP_06637PF01610
537011.PREVCOP_03674PF06250
537011.PREVCOP_03677(PF01555)
537011.PREVCOP_04372(PF04851)
537011.PREVCOP_05833PF13173
537011.PREVCOP_03884(PF01555)
537011.PREVCOP_05764PF01610
537011.PREVCOP_05766PF13173
537011.PREVCOP_04013(PF01555)
537011.PREVCOP_05493(PF14512)
537011.PREVCOP_04385PF13148
537011.PREVCOP_06841(PF12437)
537011.PREVCOP_05622(PF01555)
537011.PREVCOP_04178(PF04851)
537011.PREVCOP_04176(PF10544)
537011.PREVCOP_04371(PF01555)
537011.PREVCOP_04713PF06250
537011.PREVCOP_05159PF13173
537011.PREVCOP_05621(PF04851)
537011.PREVCOP_05715PF13173
537011.PREVCOP_05717PF13173
537011.PREVCOP_04008PF09820
537011.PREVCOP_04390(PF01555)
537011.PREVCOP_06540(PF13246)
537011.PREVCOP_06768PF01637
537011.PREVCOP_06760(PF14237)
537011.PREVCOP_05741PF09820
537011.PREVCOP_05859(PF00686)
537011.PREVCOP_03608PF16269
537011.PREVCOP_04725PF13173
537011.PREVCOP_04722(PF01555)
537011.PREVCOP_04721(PF04851)
537011.PREVCOP_05705PF01637
537011.PREVCOP_05528PF01637
537011.PREVCOP_05524(PF13306)
537011.PREVCOP_06777(PF04851)
537011.PREVCOP_05868(PF04326)
537011.PREVCOP_03611PF01637
537011.PREVCOP_05738PF01637
537011.PREVCOP_05739PF08011
537011.PREVCOP_06566PF06250
537011.PREVCOP_06743PF13173
537011.PREVCOP_06740PF13173
537011.PREVCOP_03910(PF04383)
537011.PREVCOP_04231PF06250
537011.PREVCOP_05723(PF13246)
537011.PREVCOP_05181(PF16314)
537011.PREVCOP_06759(PF14237)
537011.PREVCOP_06198(PF10544)
537011.PREVCOP_06356(PF04851)
537011.PREVCOP_03639PF13173
537011.PREVCOP_03831(PF04326)
537011.PREVCOP_03836(PF04383)not used
537011.PREVCOP_05316(PF12437)
537011.PREVCOP_06210PF13173
537011.PREVCOP_06327PF01610not used
537011.PREVCOP_05892(PF04851)
537011.PREVCOP_04217PF06250
537011.PREVCOP_06277PF13173
537011.PREVCOP_05415PF13173
537011.PREVCOP_03673PF01610
537011.PREVCOP_04842PF01637
537011.PREVCOP_06682PF01610not used
537011.PREVCOP_06689PF01610
537011.PREVCOP_06020(PF04851)
537011.PREVCOP_05243PF13173
537011.PREVCOP_05241(PF03235)
537011.PREVCOP_05427(PF05686)
537011.PREVCOP_06837(PF05693)
537011.PREVCOP_04874PF13173
537011.PREVCOP_06785PF01610
537011.PREVCOP_06300PF01610
537011.PREVCOP_06308PF13173
537011.PREVCOP_06013(PF14237)
537011.PREVCOP_03885(PF04851)
537011.PREVCOP_05436PF01637
537011.PREVCOP_06316PF01610
537011.PREVCOP_05917PF01610not used
537011.PREVCOP_03780(PF04851)
537011.PREVCOP_03941PF13173
537011.PREVCOP_04316(PF03235)
537011.PREVCOP_05222(PF13151)
537011.PREVCOP_05225(PF13306)
537011.PREVCOP_04794PF13148
537011.PREVCOP_05687PF13173
537011.PREVCOP_06811PF01610not used
537011.PREVCOP_06077(PF03630)
537011.PREVCOP_04324PF01610not used
537011.PREVCOP_04348(PF03235)
537011.PREVCOP_05236PF13173
537011.PREVCOP_04349(PF03235)
537011.PREVCOP_05238(PF03235)
537011.PREVCOP_05217PF01610not used
537011.PREVCOP_04744(PF05970)
537011.PREVCOP_05695(PF04851)
537011.PREVCOP_05343PF13173
537011.PREVCOP_06063(PF04326)
537011.PREVCOP_06067PF13148
537011.PREVCOP_03969PF06250
537011.PREVCOP_06652PF01610
537011.PREVCOP_05754PF01637
537011.PREVCOP_04758PF12812
537011.PREVCOP_06610PF01610
537011.PREVCOP_06580PF13173
537011.PREVCOP_04187(PF04326)
537011.PREVCOP_04341PF13173
537011.PREVCOP_05748(PF03235)
537011.PREVCOP_05747(PF03235)
537011.PREVCOP_04618PF06250
537011.PREVCOP_05216PF01610
537011.PREVCOP_05588PF09820not used
537011.PREVCOP_05566PF13173

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================