Metamenu

Effective results for Helicobacter cinaedi CCUG 18818 (eggnog40)

Summary

Number of putative secreted proteins: 149
- Predicted by T4SEpre: 147
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 36 proteins (5 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537971.HCCG_02043+ER
537971.HCCG_01646+ER
537971.HCCG_01090(PF02348)(mitochondrial)
537971.HCCG_01145(PF05711)(mitochondrial)
537971.HCCG_01089(PF02348)(mitochondrial)
537971.HCCG_01157+(ER); plastid
537971.HCCG_00379+(mitochondrial); (plastid)
537971.HCCG_01210+ER
537971.HCCG_00582+ER
537971.HCCG_00637+(mitochondrial)
537971.HCCG_01056+ER
537971.HCCG_00127+(ER)
537971.HCCG_01545+(ER)
537971.HCCG_00337+ER
537971.HCCG_00463(PF02348)mitochondrial
537971.HCCG_02123+mitochondrial; (mitochondrial)
537971.HCCG_01330+ER
537971.HCCG_01338+(mitochondrial)
537971.HCCG_00874+(mitochondrial); (ER)
537971.HCCG_00197+(ER); ER
537971.HCCG_02003+ER
537971.HCCG_01676(PF04305)ER
537971.HCCG_00753+ER
537971.HCCG_00450+ER
537971.HCCG_01112+mitochondrial
537971.HCCG_02142+ER
537971.HCCG_01609(PF02348)mitochondrial; (mitochondrial)
537971.HCCG_00552+ER
537971.HCCG_00776+ER
537971.HCCG_00766+(ER)
537971.HCCG_02292+(plastid)
537971.HCCG_02302+(mitochondrial)
537971.HCCG_01796(PF13207)(mitochondrial)
537971.HCCG_00338+(mitochondrial)
537971.HCCG_02336+(PF01555)
537971.HCCG_01487+(mitochondrial)
537971.HCCG_00551+(ER)
537971.HCCG_02046+
537971.HCCG_01095(PF05711)
537971.HCCG_01091(PF02348)
537971.HCCG_01562+
537971.HCCG_00160+
537971.HCCG_02051(PF01555)
537971.HCCG_00976+
537971.HCCG_01888+
537971.HCCG_00577(PF05154)
537971.HCCG_00756+
537971.HCCG_00758+
537971.HCCG_00593(PF01555)
537971.HCCG_00594(PF02945)
537971.HCCG_02193+
537971.HCCG_02066+
537971.HCCG_02069+
537971.HCCG_02260PF14113
537971.HCCG_02265(PF01555)
537971.HCCG_01762+
537971.HCCG_01506+
537971.HCCG_01164+
537971.HCCG_00964+
537971.HCCG_00360(PF01555)
537971.HCCG_01989+
537971.HCCG_00102+
537971.HCCG_00587+
537971.HCCG_00588(PF01555)
537971.HCCG_00589+
537971.HCCG_01244+
537971.HCCG_02181PF14113
537971.HCCG_02186PF14113
537971.HCCG_00426+
537971.HCCG_02070+
537971.HCCG_02073+
537971.HCCG_02275+
537971.HCCG_00359(PF01555)
537971.HCCG_00824(PF01555)
537971.HCCG_00826+
537971.HCCG_00007+
537971.HCCG_01742+
537971.HCCG_00905(PF04305)
537971.HCCG_00909+
537971.HCCG_00123+
537971.HCCG_00011+
537971.HCCG_02258PF14113
537971.HCCG_01351+
537971.HCCG_01534+
537971.HCCG_00248+
537971.HCCG_00480+
537971.HCCG_01829+
537971.HCCG_02220+
537971.HCCG_00411+
537971.HCCG_00928+
537971.HCCG_01108+
537971.HCCG_00259+
537971.HCCG_01105+
537971.HCCG_00074+
537971.HCCG_00670+
537971.HCCG_00671+
537971.HCCG_00673+
537971.HCCG_02234+
537971.HCCG_02127+
537971.HCCG_02129+
537971.HCCG_01335+
537971.HCCG_01331+
537971.HCCG_01243(PF05711)
537971.HCCG_00263+
537971.HCCG_00683+
537971.HCCG_00687(PF01555)
537971.HCCG_02335(PF01555)
537971.HCCG_02330+
537971.HCCG_02119+
537971.HCCG_01657+
537971.HCCG_01309+
537971.HCCG_01656+
537971.HCCG_01876(PF05686)
537971.HCCG_01870+
537971.HCCG_00696+
537971.HCCG_00305+
537971.HCCG_00452+
537971.HCCG_02323+
537971.HCCG_02325+
537971.HCCG_02214+
537971.HCCG_01485+
537971.HCCG_01269(PF01555)
537971.HCCG_00198+
537971.HCCG_00425+
537971.HCCG_01919+
537971.HCCG_02351+not used
537971.HCCG_01978+
537971.HCCG_01454+
537971.HCCG_01077(PF01555)
537971.HCCG_01072+
537971.HCCG_00433+
537971.HCCG_02166+
537971.HCCG_02010+
537971.HCCG_01115(PF01555)not used
537971.HCCG_01285+
537971.HCCG_00531+
537971.HCCG_01930+
537971.HCCG_02375+
537971.HCCG_01696+
537971.HCCG_02020+
537971.HCCG_01122(PF01555)
537971.HCCG_00898(PF05154)
537971.HCCG_00895(PF05154)
537971.HCCG_00143(PF05711)
537971.HCCG_00092PF12873
537971.HCCG_01949+
537971.HCCG_00398+
537971.HCCG_00553+
537971.HCCG_00773+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================