Effective results for Oxalobacter formigenes OXCC13 (eggnog40)

Summary

Number of putative secreted proteins: 52
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 52 proteins (43 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
556269.OFBG_00561PF08238(ER)
556269.OFBG_00638PF08238ER
556269.OFBG_00639PF08238ER
556269.OFBG_00633(PF13540)ER
556269.OFBG_00636PF08238ER
556269.OFBG_00637PF08238(ER)
556269.OFBG_00645(PF13540)ER
556269.OFBG_00641(PF13540)(ER)
556269.OFBG_00643PF08238ER
556269.OFBG_00642(PF13540)ER
556269.OFBG_01374PF08238(mitochondrial)
556269.OFBG_01770PF08238ER
556269.OFBG_00653PF08238(ER)
556269.OFBG_00650(PF13540)ER
556269.OFBG_00467PF08238ER
556269.OFBG_01752PF08238(ER)
556269.OFBG_00936PF08238ER
556269.OFBG_00935PF08238ER
556269.OFBG_00783PF08238ER
556269.OFBG_00679PF08238ER
556269.OFBG_00683PF08238(mitochondrial)
556269.OFBG_00863PF08238ER
556269.OFBG_00502PF08238ER
556269.OFBG_00504PF08238ER
556269.OFBG_00532PF08238mitochondrial
556269.OFBG_00523PF08238ER
556269.OFBG_00899PF08238ER
556269.OFBG_00553PF08238ER
556269.OFBG_00559PF08238ER
556269.OFBG_01131PF08238ER
556269.OFBG_00545PF08238(mitochondrial)
556269.OFBG_00590PF08238ER
556269.OFBG_00592PF08238ER
556269.OFBG_00621(PF13540)(mitochondrial)
556269.OFBG_00556PF08238(mitochondrial)
556269.OFBG_00580PF08238
556269.OFBG_00585PF08238
556269.OFBG_00745PF08238not used
556269.OFBG_00634PF08238
556269.OFBG_01758(PF13436)
556269.OFBG_00819PF08238
556269.OFBG_00681PF08238
556269.OFBG_01249(PF12588)
556269.OFBG_00861PF08238
556269.OFBG_01920PF08238
556269.OFBG_00859PF02415
556269.OFBG_00539PF08238
556269.OFBG_01431PF02415
556269.OFBG_00544PF08238
556269.OFBG_00166PF08238
556269.OFBG_01884(PF11969)
556269.OFBG_01405PF06888

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================