Effective results for Mycobacterium abscessus ATCC 19977 (eggnog40)
Summary
Number of putative secreted proteins: 281
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 34 eukaryotic-like domains, contained in 281 proteins (22 high, 259 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 561007.MAB_2560 | (PF08310) | ER | |||
| 561007.MAB_3765 | (PF01083) | (mitochondrial); (plastid) | |||
| 561007.MAB_3766 | (PF01083) | ER | |||
| 561007.MAB_1007c | (PF02470) | (ER) | |||
| 561007.MAB_1697 | (PF02470) | ER | |||
| 561007.MAB_1696 | (PF02470) | ER | |||
| 561007.MAB_1693 | (PF02405) | (mitochondrial) | |||
| 561007.MAB_1699 | (PF02470) | ER | |||
| 561007.MAB_1698 | (PF02470) | ER | |||
| 561007.MAB_4034 | (PF02470) | ER | |||
| 561007.MAB_4035 | (PF02470) | ER | |||
| 561007.MAB_4031 | (PF02470) | ER | |||
| 561007.MAB_4033 | (PF02470) | (mitochondrial) | |||
| 561007.MAB_2969 | (PF03109) | mitochondrial; (mitochondrial) | |||
| 561007.MAB_4513c | (PF02470) | ER | |||
| 561007.MAB_1006c | (PF02470) | mitochondrial; ER | |||
| 561007.MAB_1458 | (PF14494) | (mitochondrial) | |||
| 561007.MAB_0168c | (PF08310) | mitochondrial; (mitochondrial) | |||
| 561007.MAB_4328c | PF04072 | (ER) | |||
| 561007.MAB_3207 | (PF13564) | ER | |||
| 561007.MAB_4649c | (PF10604) | ER | |||
| 561007.MAB_2448 | (PF14248) | ER | |||
| 561007.MAB_4515c | (PF02470) | ER | |||
| 561007.MAB_0178 | (PF01083) | (ER); ER | |||
| 561007.MAB_4041c | (PF10604) | ER | |||
| 561007.MAB_1010c | (PF02470) | ER | |||
| 561007.MAB_4703c | (PF03176) | ER | |||
| 561007.MAB_4508 | (PF03176) | ER | |||
| 561007.MAB_4595c | (PF02470) | ER | |||
| 561007.MAB_4517c | (PF02405) | mitochondrial; (mitochondrial) | |||
| 561007.MAB_1001 | (PF14248) | (ER) | |||
| 561007.MAB_0125c | PF04072 | mitochondrial | |||
| 561007.MAB_4596c | (PF02470) | (ER) | |||
| 561007.MAB_4310c | (PF03176) | (mitochondrial); (ER) | |||
| 561007.MAB_4512c | (PF02470) | mitochondrial | |||
| 561007.MAB_4598c | (PF02470) | ER | |||
| 561007.MAB_3504 | (PF03109) | (mitochondrial) | |||
| 561007.MAB_2564 | (PF00484) | ER | |||
| 561007.MAB_2275 | (PF03176) | ER | |||
| 561007.MAB_2945c | (PF02470) | ER | |||
| 561007.MAB_3809c | (PF01083) | ER | |||
| 561007.MAB_4529 | (PF03176) | ER | |||
| 561007.MAB_4240c | (PF03176) | ER | |||
| 561007.MAB_4150c | (PF02470) | ER | |||
| 561007.MAB_4045c | (PF03109) | mitochondrial | |||
| 561007.MAB_4424 | (PF10604) | ER | |||
| 561007.MAB_2656 | (PF00484) | ER | |||
| 561007.MAB_2650 | (PF03176) | (mitochondrial) | |||
| 561007.MAB_4707c | (PF03583) | ER; (ER) | |||
| 561007.MAB_3710 | (PF07993) | (mitochondrial) | |||
| 561007.MAB_1287 | (PF03176) | ER | |||
| 561007.MAB_4152c | (PF02470) | ER | |||
| 561007.MAB_4768c | (PF03176) | (ER) | |||
| 561007.MAB_4565c | (PF02470) | ER | |||
| 561007.MAB_2527 | (PF08310) | mitochondrial | |||
| 561007.MAB_1009c | (PF02470) | ER | |||
| 561007.MAB_4153c | (PF02470) | ER | |||
| 561007.MAB_1520c | (PF03176) | ER | |||
| 561007.MAB_3803c | (PF00135) | ER | |||
| 561007.MAB_0918c | (PF03583) | (mitochondrial); plastid | |||
| 561007.MAB_4564c | (PF02470) | ER | |||
| 561007.MAB_4116c | (PF03176) | (ER) | |||
| 561007.MAB_4149c | (PF02470) | ER | |||
| 561007.MAB_1700 | (PF02470) | ER | |||
| 561007.MAB_4731c | (PF13564) | ER | |||
| 561007.MAB_2714c | (PF13564) | (ER) | |||
| 561007.MAB_4351 | (PF03583) | ER | |||
| 561007.MAB_4567c | (PF02470) | ER | |||
| 561007.MAB_0294 | (PF00135) | ER | |||
| 561007.MAB_0937c | (PF03176) | ER | |||
| 561007.MAB_3744 | (PF07224) | mitochondrial | |||
| 561007.MAB_4148c | (PF02470) | ER | |||
| 561007.MAB_2715c | (PF13564) | ER | |||
| 561007.MAB_4511c | (PF02470) | (plastid) | |||
| 561007.MAB_3763 | (PF01083) | (mitochondrial) | |||
| 561007.MAB_1694 | (PF02405) | (mitochondrial) | |||
| 561007.MAB_3896c | (PF13452) | (plastid) | |||
| 561007.MAB_4563c | (PF02470) | (mitochondrial) | |||
| 561007.MAB_0987c | (PF03176) | (ER) | |||
| 561007.MAB_0958c | (PF13738) | (plastid) | |||
| 561007.MAB_1137c | (PF03176) | (ER) | |||
| 561007.MAB_0274c | (PF14232) (PF14231) | ||||
| 561007.MAB_3507 | (PF03109) | (mitochondrial) | |||
| 561007.MAB_3282c | (PF03583) | (ER) | |||
| 561007.MAB_2253 | PF04072 | (ER) | |||
| 561007.MAB_1178c | (PF08310) | (plastid) | |||
| 561007.MAB_4387 | (PF14232) (PF14231) | ||||
| 561007.MAB_4154c | (PF02405) | plastid | |||
| 561007.MAB_2570c | (PF03176) | (ER) | |||
| 561007.MAB_1005c | (PF02470) | mitochondrial | |||
| 561007.MAB_3263c | (PF09995) | ||||
| 561007.MAB_2327c | (PF06013) | ||||
| 561007.MAB_4566c | (PF02470) | ||||
| 561007.MAB_3112 | (PF06013) | ||||
| 561007.MAB_3113 | (PF06013) | ||||
| 561007.MAB_0137 | (PF13911) | ||||
| 561007.MAB_1981 | (PF10604) | ||||
| 561007.MAB_2949c | (PF13452) | ||||
| 561007.MAB_4029 | (PF02405) | ||||
| 561007.MAB_4028 | (PF02405) | ||||
| 561007.MAB_4098c | (PF07993) | ||||
| 561007.MAB_0831 | (PF10604) | ||||
| 561007.MAB_2326c | (PF06013) | ||||
| 561007.MAB_4930 | (PF08608) | ||||
| 561007.MAB_0140c | (PF13738) | ||||
| 561007.MAB_4587c | PF04072 | ||||
| 561007.MAB_4840c | (PF13738) | ||||
| 561007.MAB_0668c | PF04072 | ||||
| 561007.MAB_1695 | (PF02470) | ||||
| 561007.MAB_4042c | (PF13738) | ||||
| 561007.MAB_4030 | (PF02470) | ||||
| 561007.MAB_4032 | (PF02470) | ||||
| 561007.MAB_2962 | (PF07993) | ||||
| 561007.MAB_2963 | (PF07993) | ||||
| 561007.MAB_4586c | PF04072 | ||||
| 561007.MAB_2210c | (PF03176) | ||||
| 561007.MAB_3139c | (PF10604) | ||||
| 561007.MAB_3354 | (PF03405) | ||||
| 561007.MAB_1028c | (PF02560) | ||||
| 561007.MAB_4050c | (PF13738) | ||||
| 561007.MAB_4134 | (PF03583) | ||||
| 561007.MAB_4112c | (PF03033) | ||||
| 561007.MAB_4600c | (PF02405) | ||||
| 561007.MAB_1527 | (PF13738) | ||||
| 561007.MAB_0027c | PF04072 | ||||
| 561007.MAB_4329c | (PF09995) | ||||
| 561007.MAB_4316 | (PF06013) | ||||
| 561007.MAB_4646 | (PF09995) | ||||
| 561007.MAB_2457c | (PF10604) | ||||
| 561007.MAB_4263 | (PF03176) | ||||
| 561007.MAB_3367 | (PF07993) | ||||
| 561007.MAB_4585c | PF04072 | ||||
| 561007.MAB_4514c | (PF02470) | ||||
| 561007.MAB_2301 | (PF03176) | ||||
| 561007.MAB_2303 | (PF03176) | ||||
| 561007.MAB_1292c | PF04072 | ||||
| 561007.MAB_4694c | (PF03033) | ||||
| 561007.MAB_4344c | (PF05088) | ||||
| 561007.MAB_1012c | (PF02405) | ||||
| 561007.MAB_4039c | (PF13738) | ||||
| 561007.MAB_4780 | (PF13452) | ||||
| 561007.MAB_0213c | PF04072 | ||||
| 561007.MAB_0136 | (PF09995) | ||||
| 561007.MAB_0317 | (PF10604) | ||||
| 561007.MAB_4584c | PF04072 | ||||
| 561007.MAB_4601c | (PF02405) | ||||
| 561007.MAB_3201 | (PF03176) | ||||
| 561007.MAB_2294c | (PF13738) | ||||
| 561007.MAB_0754c | (PF03405) | ||||
| 561007.MAB_3150 | (PF03176) | ||||
| 561007.MAB_2157 | (PF03405) | ||||
| 561007.MAB_3754c | (PF06013) | ||||
| 561007.MAB_0559 | (PF00484) | ||||
| 561007.MAB_0820c | (PF05088) | ||||
| 561007.MAB_4038c | (PF10604) | ||||
| 561007.MAB_1529c | (PF13452) | ||||
| 561007.MAB_1541 | (PF01083) | ||||
| 561007.MAB_4338c | (PF10604) | ||||
| 561007.MAB_0301 | (PF00135) | ||||
| 561007.MAB_4464 | (PF06013) | ||||
| 561007.MAB_4463 | (PF06013) | ||||
| 561007.MAB_4594c | (PF02470) | ||||
| 561007.MAB_3098 | (PF00484) | ||||
| 561007.MAB_3301 | (PF09995) | ||||
| 561007.MAB_1237 | (PF03405) | ||||
| 561007.MAB_4516c | (PF02470) | ||||
| 561007.MAB_3753c | (PF06013) | ||||
| 561007.MAB_2149 | (PF02405) | ||||
| 561007.MAB_3562c | (PF03176) | ||||
| 561007.MAB_1134c | (PF03176) | ||||
| 561007.MAB_3787 | PF04072 | ||||
| 561007.MAB_4714c | (PF07993) | ||||
| 561007.MAB_0379 | (PF13452) | ||||
| 561007.MAB_0621c | (PF13452) | ||||
| 561007.MAB_3082 | PF04072 | ||||
| 561007.MAB_3319 | (PF09995) | ||||
| 561007.MAB_3314 | (PF03109) | ||||
| 561007.MAB_3315 | (PF03109) | ||||
| 561007.MAB_1223 | (PF00135) | ||||
| 561007.MAB_3272c | (PF01083) | ||||
| 561007.MAB_1011c | (PF02405) | ||||
| 561007.MAB_4107c | (PF03033) | ||||
| 561007.MAB_0757 | (PF09995) | ||||
| 561007.MAB_1561 | (PF05088) | ||||
| 561007.MAB_0966 | (PF10604) | ||||
| 561007.MAB_0965 | (PF03583) | ||||
| 561007.MAB_3102c | (PF13738) | ||||
| 561007.MAB_4518c | (PF02405) | ||||
| 561007.MAB_1368 | (PF09995) | ||||
| 561007.MAB_2054 | (PF13452) | ||||
| 561007.MAB_2056 | (PF13452) | ||||
| 561007.MAB_2059 | (PF08608) | ||||
| 561007.MAB_3503 | (PF03109) | ||||
| 561007.MAB_4476c | (PF13738) | ||||
| 561007.MAB_2676 | (PF03583) | ||||
| 561007.MAB_3317c | (PF07993) | ||||
| 561007.MAB_2550c | (PF03405) | ||||
| 561007.MAB_1023c | (PF09995) | ||||
| 561007.MAB_4108c | (PF05711) | ||||
| 561007.MAB_1774 | (PF05711) | ||||
| 561007.MAB_2902 | (PF09348) | ||||
| 561007.MAB_3920c | (PF13738) | ||||
| 561007.MAB_1286c | (PF06013) | ||||
| 561007.MAB_4599c | (PF02470) | ||||
| 561007.MAB_4597c | (PF02470) | ||||
| 561007.MAB_0513 | (PF13738) | ||||
| 561007.MAB_3452c | (PF00135) | ||||
| 561007.MAB_2477c | (PF13738) | ||||
| 561007.MAB_4105c | (PF05711) | ||||
| 561007.MAB_4058c | (PF10604) | ||||
| 561007.MAB_2037 | (PF03176) | ||||
| 561007.MAB_4606c | PF04072 | ||||
| 561007.MAB_0054c | (PF02560) | ||||
| 561007.MAB_4704c | (PF03176) | ||||
| 561007.MAB_3996 | (PF13452) | ||||
| 561007.MAB_4831c | (PF06013) | ||||
| 561007.MAB_4429 | (PF14832) | ||||
| 561007.MAB_0877c | (PF10604) | ||||
| 561007.MAB_3457 | (PF09348) | ||||
| 561007.MAB_3211c | (PF00484) | ||||
| 561007.MAB_2077 | (PF13738) | ||||
| 561007.MAB_2074 | (PF13738) | ||||
| 561007.MAB_2073 | (PF13738) | ||||
| 561007.MAB_3076 | (PF09995) | ||||
| 561007.MAB_4403c | (PF03405) | ||||
| 561007.MAB_4610c | PF04072 | ||||
| 561007.MAB_1392c | (PF03583) | ||||
| 561007.MAB_4126c | (PF00484) | ||||
| 561007.MAB_3453c | (PF00135) | ||||
| 561007.MAB_1759 | (PF14216) | ||||
| 561007.MAB_4382c | (PF03176) | ||||
| 561007.MAB_4607c | PF04072 | ||||
| 561007.MAB_2819 | (PF02544) | ||||
| 561007.MAB_4104 | (PF03033) | ||||
| 561007.MAB_4830c | (PF06013) | ||||
| 561007.MAB_2274c | (PF13564) | ||||
| 561007.MAB_2866c | (PF00135) | ||||
| 561007.MAB_3898c | (PF13452) | ||||
| 561007.MAB_4568c | (PF02470) | ||||
| 561007.MAB_0963c | PF04072 | ||||
| 561007.MAB_2169c | PF04072 | ||||
| 561007.MAB_2391 | (PF03109) | ||||
| 561007.MAB_2394 | (PF10604) | ||||
| 561007.MAB_2006 | (PF03033) | ||||
| 561007.MAB_3336c | (PF00135) | ||||
| 561007.MAB_4746 | (PF03176) | ||||
| 561007.MAB_1512 | (PF08354) | ||||
| 561007.MAB_3846 | (PF09995) | ||||
| 561007.MAB_3847 | (PF09995) | ||||
| 561007.MAB_0666 | (PF06013) | ||||
| 561007.MAB_4405 | (PF01083) | ||||
| 561007.MAB_3886c | PF04072 | ||||
| 561007.MAB_0099 | (PF13738) | ||||
| 561007.MAB_2950c | (PF10604) | ||||
| 561007.MAB_2538c | (PF03583) | ||||
| 561007.MAB_1230c | (PF09995) | ||||
| 561007.MAB_2393c | (PF03109) | ||||
| 561007.MAB_3879 | (PF03109) | ||||
| 561007.MAB_0705 | (PF13564) | ||||
| 561007.MAB_4115c | (PF03176) | ||||
| 561007.MAB_4017c | (PF13738) | ||||
| 561007.MAB_3393 | (PF10604) | ||||
| 561007.MAB_0286 | (PF10604) | ||||
| 561007.MAB_1295c | PF04072 | ||||
| 561007.MAB_2209c | PF04072 | ||||
| 561007.MAB_0468 | (PF00484) | ||||
| 561007.MAB_1008c | (PF02470) | ||||
| 561007.MAB_4016c | (PF10604) | ||||
| 561007.MAB_0855 | (PF03176) | ||||
| 561007.MAB_0859 | (PF10604) | ||||
| 561007.MAB_0142c | (PF13738) | ||||
| 561007.MAB_2228c | (PF06013) | ||||
| 561007.MAB_2291 | (PF10604) | ||||
| 561007.MAB_4151c | (PF02470) | ||||
| 561007.MAB_0478 | (PF03176) | ||||
| 561007.MAB_2571c | (PF03176) | ||||
| 561007.MAB_1517c | PF04072 | ||||
| 561007.MAB_0616 | (PF13452) | ||||
| 561007.MAB_4155c | (PF02405) | ||||
| 561007.MAB_0049 | (PF06013) | ||||
| 561007.MAB_3954c | (PF10604) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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