Effective results for Moritella sp. PE36 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 44 proteins (5 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
58051.PE36_03431PF13127ER
58051.PE36_17700PF13127ER
58051.PE36_18710(PF01764)ER
58051.PE36_08421(PF05929)(ER)
58051.PE36_12737(PF05929)(ER)
58051.PE36_04041(PF05548)ER
58051.PE36_10238(PF00045)ER
58051.PE36_10538PF00058ER
58051.PE36_18795PF11105ER
58051.PE36_04828(PF00050)ER
58051.PE36_21249(PF09811)(mitochondrial)
58051.PE36_06117(PF03102)(mitochondrial)
58051.PE36_03416(PF01764)(ER)
58051.PE36_17105(PF10609)(mitochondrial)
58051.PE36_23076(PF06418)(mitochondrial); not used
58051.PE36_00960(PF12256) (PF12255)
58051.PE36_16545(PF03848)(plastid)
58051.PE36_20270(PF03199) (PF03917)
58051.PE36_16520(PF01715)
58051.PE36_09703(PF10014)
58051.PE36_12257(PF03848)
58051.PE36_03361(PF10014)
58051.PE36_23231(PF01715)
58051.PE36_22550(PF12256)
58051.PE36_06048(PF03102)
58051.PE36_01582PF02807
58051.PE36_11557(PF10609)
58051.PE36_08091(PF01764)
58051.PE36_01857(PF04446)
58051.PE36_18860(PF06042)
58051.PE36_10158(PF00070)
58051.PE36_03686(PF10014)
58051.PE36_14380(PF13875)
58051.PE36_19590(PF01490)
58051.PE36_08116(PF13455)
58051.PE36_17725(PF08271)
58051.PE36_17340(PF10354)
58051.PE36_13057(PF04970)
58051.PE36_10403(PF10609)
58051.PE36_23071(PF06418)not used
58051.PE36_17962(PF06042)
58051.PE36_00970(PF03538)
58051.PE36_06227(PF03102)
58051.PE36_08391(PF04970)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================