Effective results for Ruminococcus bromii L2-63 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
657321.RBR_07410(PF04432)(mitochondrial); mitochondrial
657321.RBR_18860(PF13306)ER
657321.RBR_03890(PF13306)ER
657321.RBR_19520(PF05257)ER
657321.RBR_02970(PF13306)ER
657321.RBR_17820(PF01992)(mitochondrial); mitochondrial
657321.RBR_09520(PF13306)ER
657321.RBR_09140(PF13306)ER
657321.RBR_02990(PF13306)ER
657321.RBR_12220(PF01813)(mitochondrial)
657321.RBR_17890(PF01813)(mitochondrial)
657321.RBR_03480(PF13306)ER
657321.RBR_08840(PF13306)ER
657321.RBR_17960(PF13306)ER
657321.RBR_21130(PF05257)
657321.RBR_04270(PF02943)
657321.RBR_12260(PF01992)
657321.RBR_01940(PF02938)
657321.RBR_09030PF02407
657321.RBR_17850(PF01990)
657321.RBR_20580(PF04991)
657321.RBR_00450(PF05257)
657321.RBR_17860(PF01991)
657321.RBR_03460(PF13507)
657321.RBR_06220(PF02938)
657321.RBR_11100(PF04991)
657321.RBR_14980(PF04991)
657321.RBR_07420(PF04432)
657321.RBR_17420(PF05257)
657321.RBR_07340(PF04432)
657321.RBR_12250(PF01990)
657321.RBR_03500(PF13507)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================