Effective results for Methylotenera versatilis 301 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 22 proteins (2 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
666681.M301_1317(PF01148)ER
666681.M301_1875PF10520ER
666681.M301_0787(PF03959)ER
666681.M301_0783(PF00163)(mitochondrial)
666681.M301_2073(PF06764)ER
666681.M301_2592(PF06764)ER
666681.M301_1489(PF12513)(mitochondrial)
666681.M301_1153(PF13664)ER
666681.M301_1033(PF00121)(mitochondrial)
666681.M301_1996(PF13664)ER
666681.M301_2183(PF01148)ER
666681.M301_1803(PF00121)(mitochondrial)
666681.M301_2351(PF01148)
666681.M301_2656(PF01786)
666681.M301_0311(PF11969)
666681.M301_1786PF06888
666681.M301_2125(PF10013)not used
666681.M301_2135(PF03803)
666681.M301_0360(PF00163)
666681.M301_2165(PF00121)
666681.M301_0719(PF16184)
666681.M301_0718(PF16184)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================