Effective results for Bacteroides coprosuis DSM 18011 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 57 proteins (1 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
679937.Bcop_2048(PF12972) (PF12971) (PF05089)ER
679937.Bcop_2052(PF12972) (PF12971) (PF05089)ER
679937.Bcop_1549(PF16332) (PF07940)ER
679937.Bcop_1984(PF16889) (PF07940)ER
679937.Bcop_1983(PF16332) (PF07940)ER
679937.Bcop_1991(PF16889) (PF07940)ER
679937.Bcop_1992(PF16889) (PF07940)ER
679937.Bcop_0431(PF13431)ER
679937.Bcop_0537(PF03092)ER
679937.Bcop_0464(PF13905)ER
679937.Bcop_0489(PF13905)ER
679937.Bcop_1999(PF01610)ER; (ER)
679937.Bcop_0252(PF13431)ER
679937.Bcop_1269(PF03663)ER
679937.Bcop_1268(PF03663)ER
679937.Bcop_1832(PF00728)ER; (ER)
679937.Bcop_1831(PF00728)ER
679937.Bcop_0290(PF00728)ER
679937.Bcop_0297(PF00728)ER
679937.Bcop_0607(PF01610)ER; (ER)
679937.Bcop_2329(PF00728)ER
679937.Bcop_1026(PF13905)ER
679937.Bcop_1371(PF00728)ER
679937.Bcop_1376(PF01610)ER; (ER)
679937.Bcop_0895(PF13905)ER
679937.Bcop_1795(PF07168)ER
679937.Bcop_2096(PF01610)(mitochondrial)
679937.Bcop_0524(PF01610)(mitochondrial)
679937.Bcop_1130(PF05034) (PF07476)
679937.Bcop_1224(PF02971) (PF07837)
679937.Bcop_1742(PF03630)(plastid)
679937.Bcop_0934(PF01610)
679937.Bcop_1086(PF00302)
679937.Bcop_0451(PF01610)
679937.Bcop_1870(PF04432)
679937.Bcop_1871(PF04432)
679937.Bcop_1749(PF12640)
679937.Bcop_1058(PF16314)
679937.Bcop_0274(PF01610)
679937.Bcop_0273(PF01649)
679937.Bcop_0272(PF01649)
679937.Bcop_2061(PF01610)
679937.Bcop_1609(PF01610)
679937.Bcop_1047(PF01715)
679937.Bcop_0539PF16269
679937.Bcop_0750(PF01715)
679937.Bcop_0830(PF01610)
679937.Bcop_0525(PF01610)
679937.Bcop_1641(PF00302)
679937.Bcop_0606(PF01610)
679937.Bcop_1132(PF14330)
679937.Bcop_2003(PF01610)
679937.Bcop_2004(PF01610)
679937.Bcop_1592(PF00302)
679937.Bcop_0882(PF05693)
679937.Bcop_0376(PF16011)
679937.Bcop_1767(PF16565)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================