Effective results for alpha proteobacterium HIMB114 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 24 proteins (7 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
684719.HIMB114_1441(PF10517)ER
684719.HIMB114_0016(PF00622)(mitochondrial); (plastid)
684719.HIMB114_0015PF07460(mitochondrial)
684719.HIMB114_0230(PF08491)ER
684719.HIMB114_0437(PF01036)ER
684719.HIMB114_0886(PF01036)(mitochondrial); (plastid)
684719.HIMB114_0069PF03092ER
684719.HIMB114_0049(PF10517)ER
684719.HIMB114_0709(PF06455)ER
684719.HIMB114_0377(PF04519)
684719.HIMB114_0376(PF04519)
684719.HIMB114_1446(PF14342)
684719.HIMB114_0963(PF04519)
684719.HIMB114_1287(PF10013)not used
684719.HIMB114_0083PF00380
684719.HIMB114_0085PF00572
684719.HIMB114_0468(PF13507)
684719.HIMB114_0054(PF14342)
684719.HIMB114_0844(PF04519)
684719.HIMB114_0597PF00572
684719.HIMB114_0598PF00380
684719.HIMB114_0610(PF05637)
684719.HIMB114_1458(PF13507)not used
684719.HIMB114_0105PF03092not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================