Effective results for Novosphingobium sp. PP1Y (eggnog40)

Summary

Number of putative secreted proteins: 101
- Predicted by T4SEpre: 70
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 43 proteins (0 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
702113.PP1Y_AT27326(PF06455)ER
702113.PP1Y_AT31415+(mitochondrial)
702113.PP1Y_AT12522+mitochondrial
702113.PP1Y_AT16773(PF13207)(mitochondrial)
702113.PP1Y_AT6403+ER
702113.PP1Y_AT24345+mitochondrial
702113.PP1Y_AT29061+ER
702113.PP1Y_AT19175+ER
702113.PP1Y_AT35138+mitochondrial
702113.PP1Y_AT31957+(mitochondrial)
702113.PP1Y_AT24777+ER
702113.PP1Y_AT26940+(mitochondrial); mitochondrial
702113.PP1Y_AT21281+(mitochondrial)
702113.PP1Y_AT32302(PF13872) (PF13871)(plastid)
702113.PP1Y_AT192+ER; plastid
702113.PP1Y_AT5105+ER
702113.PP1Y_AT5449+ER
702113.PP1Y_AT6032+ER
702113.PP1Y_AT14195+ER
702113.PP1Y_AT7107+ER
702113.PP1Y_AT10866(PF00355) (PF00848)
702113.PP1Y_AT33003+(ER)
702113.PP1Y_AT14814+(mitochondrial)
702113.PP1Y_AT31241(PF00355) (PF00848)
702113.PP1Y_AT31065(PF00355) (PF00848)
702113.PP1Y_AT30726+(mitochondrial)
702113.PP1Y_AT31705(PF00355) (PF00848)
702113.PP1Y_AT31674(PF00355) (PF00848)
702113.PP1Y_AT15610(PF00355) (PF00848)
702113.PP1Y_AT34423+(plastid)
702113.PP1Y_AT8063+(mitochondrial)
702113.PP1Y_AT15992(PF00355) (PF00848)
702113.PP1Y_AT15854(PF00355) (PF00848)
702113.PP1Y_AT31297(PF00355) (PF00848)
702113.PP1Y_AT13595(PF00355) (PF00848)
702113.PP1Y_AT22200(PF13872) (PF13871)
702113.PP1Y_AT4063+plastid
702113.PP1Y_AT37066+(ER)
702113.PP1Y_AT15795(PF00355) (PF00848)
702113.PP1Y_AT15780(PF00355) (PF00848)
702113.PP1Y_AT18786+(mitochondrial)
702113.PP1Y_AT13576(PF00355) (PF00848)
702113.PP1Y_AT31315(PF00355) (PF00848)
702113.PP1Y_AT14538(PF13872) (PF13871)
702113.PP1Y_AT11936(PF00355)(ER)
702113.PP1Y_AT13423(PF00355) (PF00848)
702113.PP1Y_AT13500(PF00355) (PF00848)
702113.PP1Y_AT13437(PF00355) (PF00848)
702113.PP1Y_AT4418(PF00355) (PF00848)
702113.PP1Y_AT13537(PF00355) (PF00848)
702113.PP1Y_AT36501(PF00355) (PF00848)
702113.PP1Y_AT31645(PF00355) (PF00848)
702113.PP1Y_AT15578(PF00355) (PF00848)
702113.PP1Y_AT13649(PF00355) (PF00848)
702113.PP1Y_AT15637(PF00355) (PF00848)
702113.PP1Y_AT4161(PF02933)
702113.PP1Y_AT13724+
702113.PP1Y_AT3663+
702113.PP1Y_AT22937(PF00162)
702113.PP1Y_AT13327(PF00355)
702113.PP1Y_AT4579+
702113.PP1Y_AT30722+
702113.PP1Y_AT4105+
702113.PP1Y_AT7586+
702113.PP1Y_AT26651+
702113.PP1Y_AT20235+
702113.PP1Y_AT28131+
702113.PP1Y_AT35170(PF03901)
702113.PP1Y_AT25461+
702113.PP1Y_AT16177+
702113.PP1Y_AT3119(PF13872)
702113.PP1Y_AT28107+
702113.PP1Y_AT1927+
702113.PP1Y_AT18960+
702113.PP1Y_AT23747+
702113.PP1Y_AT17927(PF09298)
702113.PP1Y_AT34430+
702113.PP1Y_AT32377+
702113.PP1Y_AT6695+
702113.PP1Y_AT29047+
702113.PP1Y_AT29868+
702113.PP1Y_AT12562(PF09298)
702113.PP1Y_AT208+
702113.PP1Y_AT12150+
702113.PP1Y_AT3187(PF13871)
702113.PP1Y_AT23239+
702113.PP1Y_AT34482+
702113.PP1Y_AT15594(PF00355)
702113.PP1Y_AT20282+
702113.PP1Y_AT34666+
702113.PP1Y_AT31695(PF00355)
702113.PP1Y_AT28745(PF00162)
702113.PP1Y_AT2399+
702113.PP1Y_AT13619+
702113.PP1Y_AT9744+
702113.PP1Y_AT36990+
702113.PP1Y_AT33074(PF09298)
702113.PP1Y_AT26756+
702113.PP1Y_AT17145+
702113.PP1Y_AT4735+
702113.PP1Y_AT1286(PF00355)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.7 (17/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================